Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(33,137)
  Primates
(196)
  Rodents
(10,648)
  Mammals
(1,806)
  Vertebrates
(771)
  Invertebrates
(1,113)
  Plants
(7,693)
  Bacteria
(2,917)
  Viruses
(10)
  Phages
(0)
  Unclassified
(511)
  All
(58,828)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(8)
  Tiling Array
(0)
  cDNA Array
(38)
  Oligo Array
(348)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(41)
  Other
(76)
  All
(511)
 
  brain
(4)
  blood
(171)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(11)
  lung
(1)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(3)
  unclassified
(321)
  all
(511)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1302412 D. shibae 5 h in the light after 12 days in co-culture with the dinoflagellate P. minimum, replicate 1 0 Helmholtz-Centre for Infection Research 2014-01-07 [HT Sequencing] Illumina Genome Analyzer IIx (Dinoroseobacter shibae DFL 12) (GPL18143) SRA unidentified
unidentified
unclassified source_name:D. shibae co-cultured with P. minimum, 5 h in the light title:D. shibae 5 h in the light after 12 days in co-culture with the dinoflagellate P. minimum, replicate 1 description:mRNA
2 GSM1302413 D. shibae 5 h in the light after 12 days in co-culture with the dinoflagellate P. minimum, replicate 2 0 Helmholtz-Centre for Infection Research 2014-01-07 [HT Sequencing] Illumina Genome Analyzer IIx (Dinoroseobacter shibae DFL 12) (GPL18143) SRA unidentified
unidentified
unclassified source_name:D. shibae co-cultured with P. minimum, 5 h in the light title:D. shibae 5 h in the light after 12 days in co-culture with the dinoflagellate P. minimum, replicate 2 description:mRNA
3 GSM623518 Environmental DNA form contaminated aquifer_Feb. 06_6.5m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Feb. 06_6.5m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
4 GSM623519 Environmental DNA form contaminated aquifer_Feb. 06_6.65m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Feb. 06_6.65m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
5 GSM623520 Environmental DNA form contaminated aquifer_Feb. 06_6.9m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Feb. 06_6.9m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
6 GSM623521 Environmental DNA form contaminated aquifer_Feb. 06_7.1m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Feb. 06_7.1m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
7 GSM623522 Environmental DNA form contaminated aquifer_Feb. 06_8.1m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Feb. 06_8.1m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
8 GSM623523 Environmental DNA form contaminated aquifer_Sep. 08_6.4m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Sep. 08_6.4m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
9 GSM623524 Environmental DNA form contaminated aquifer_Sep. 08_6.7m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Sep. 08_6.7m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
10 GSM623525 Environmental DNA form contaminated aquifer_Sep. 08_6.9m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Sep. 08_6.9m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
11 GSM623526 Environmental DNA form contaminated aquifer_Sep. 08_7.15m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Sep. 08_7.15m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
12 GSM623527 Environmental DNA form contaminated aquifer_Sep. 08_8.3m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Sep. 08_8.3m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
13 GSM623528 Environmental DNA form contaminated aquifer_Jun. 09_6.55m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Jun. 09_6.55m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
14 GSM623529 Environmental DNA form contaminated aquifer_Jun. 09_6.85m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Jun. 09_6.85m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
15 GSM623530 Environmental DNA form contaminated aquifer_Jun. 09_7.15m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Jun. 09_7.15m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
16 GSM623531 Environmental DNA form contaminated aquifer_Jun. 09_7.25m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Jun. 09_7.25m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
17 GSM623532 Environmental DNA form contaminated aquifer_Jun. 09_8.35m 0 Helmholtz-Centre Munich 2010-11-15 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Aquifer Sediment title:Environmental DNA form contaminated aquifer_Jun. 09_8.35m description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
18 GSM624684 Envirnomental contaminated aquifer sample enriched for DNA Stable Isotope Probing 1 0 Helmholtz-Centre Munich 2010-11-17 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Fresh Aquifer Sediment title:Envirnomental contaminated aquifer sample enriched for DNA Stable Isotope Probing 1 description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
19 GSM624685 Envirnomental contaminated aquifer sample enriched for DNA Stable Isotope Probing 2 0 Helmholtz-Centre Munich 2010-11-17 [HT Sequencing] 454 GS FLX (unidentified) (GPL11212) SRA unidentified
unidentified
unclassified source_name:Fresh Aquifer Sediment title:Envirnomental contaminated aquifer sample enriched for DNA Stable Isotope Probing 2 description:small rRNA were amplified from total nucleic acids extracted from environmental samples using specific PCR primers
20 GSM871945 Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.b 0 Helmholtz-Centre Munich 2012-02-08 [HT Sequencing] 454 GS FLX (environmental samples) (GPL15200) SRA environmental samples,prokaryotic environmental samples
environmental samples,prokaryotic environmental samples
unclassified source_name:Aquifer Sediment title:Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.b description:small rRNA were amplified using specific PCR primers from total nucleic acids extracted from environmental samples
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