Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(8,118)		   Primates
(0)		   Rodents
(3,172)		   Mammals
(470)		   Vertebrates
(439)		   Invertebrates
(581)		   Plants
(1,380)		   Bacteria
(549)		   Viruses
(0)		   Phages
(0)		   Unclassified
(30)		   All
(14,751)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(0)		   cDNA Array
(12)		   Oligo Array
(18)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(30)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(30)		   all
(30)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM908969 Pf-5_Cu adapted_replicate 1 27,648 Macquarie University 2012-04-04 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:Pseudomonas fluorescens Pf-5, CuSO4 treated Pseudomonas fluorescens Pf-5, non-Cu treated title:Pf-5_Cu adapted_replicate 1 description:Biological replicate 3
2 GSM908970 Pf-5_Cu adapted_replicate 2 27,648 Macquarie University 2012-04-04 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:Pseudomonas fluorescens Pf-5, CuSO4 treated Pseudomonas fluorescens Pf-5, non-Cu treated title:Pf-5_Cu adapted_replicate 2 description:Biological replicate 1
3 GSM908971 Pf-5_Cu adapted_replicate 3 27,648 Macquarie University 2012-04-04 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:Pseudomonas fluorescens Pf-5, CuSO4 treated Pseudomonas fluorescens Pf-5, non-Cu treated title:Pf-5_Cu adapted_replicate 3 description:Biological replicate 2
4 GSM908972 Pf-5_Cu adapted_replicate 4 27,648 Macquarie University 2012-04-04 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:Pseudomonas fluorescens Pf-5, CuSO4 treated Pseudomonas fluorescens Pf-5, non-Cu treated title:Pf-5_Cu adapted_replicate 4 description:Technical replicate 2 of biological replicate 1
5 GSM908973 Pf-5_Cu adapted_replicate 5 27,648 Macquarie University 2012-04-04 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:Pseudomonas fluorescens Pf-5, CuSO4 treated Pseudomonas fluorescens Pf-5, non-Cu treated title:Pf-5_Cu adapted_replicate 5 description:Technical replicate 2 of biological replicate 3
6 GSM908974 Pf-5_Cu adapted_replicate 6 27,648 Macquarie University 2012-04-04 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:Pseudomonas fluorescens Pf-5, CuSO4 treated Pseudomonas fluorescens Pf-5, non-Cu treated title:Pf-5_Cu adapted_replicate 6 description:Technical replicate 3 of biological replicate 3
7 GSM406443 GPF_13285917_gacA_mutant_early_rep3 18,441 Macquarie University 2009-05-21 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:G4-gacA mutant P4-wt title:GPF_13285917_gacA_mutant_early_rep3 description:This slide measures gene expression of a gacA mutant as compared to wild type. The gacA mutant of Pf-5 was constructed by replacing 626 bp internal to gacA with aphI, which confers kanamycin resistance.
8 GSM406444 GPF_13285918_gacA_mutant_early_rep4 18,441 Macquarie University 2009-05-21 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:P4-wt G4-gacA mutant title:GPF_13285918_gacA_mutant_early_rep4 description:This slide measures gene expression of a gacA mutant as compared to wild type. The gacA mutant of Pf-5 was constructed by replacing 626 bp internal to gacA with aphI, which confers kanamycin resistance.
9 GSM406445 GPF_13285919_gacA_mutant_early_rep5 18,441 Macquarie University 2009-05-21 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:G5-gacA mutant P5-wt title:GPF_13285919_gacA_mutant_early_rep5 description:This slide measures gene expression of a gacA mutant as compared to wild type. The gacA mutant of Pf-5 was constructed by replacing 626 bp internal to gacA with aphI, which confers kanamycin resistance.
10 GSM406446 GPF_13285920_gacA_mutant_early_rep1 18,441 Macquarie University 2009-05-21 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:G3-gacA mutant P2-wt title:GPF_13285920_gacA_mutant_early_rep1 description:This slide measures gene expression of a gacA mutant as compared to wild type. The gacA mutant of Pf-5 was constructed by replacing 626 bp internal to gacA with aphI, which confers kanamycin resistance.
11 GSM406447 GPF_13285922_gacA_mutant_early_rep2 18,441 Macquarie University 2009-05-21 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:P2-wt G3-gacA mutant title:GPF_13285922_gacA_mutant_early_rep2 description:This slide measures gene expression of a gacA mutant as compared to wild type. The gacA mutant of Pf-5 was constructed by replacing 626 bp internal to gacA with aphI, which confers kanamycin resistance.
12 GSM406448 GPF_13285926_gacA_mutant_early_rep6 18,441 Macquarie University 2009-05-21 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:P5-wt G5-gacA mutant title:GPF_13285926_gacA_mutant_early_rep6 description:This slide measures gene expression of a gacA mutant as compared to wild type. The gacA mutant of Pf-5 was constructed by replacing 626 bp internal to gacA with aphI, which confers kanamycin resistance.
13 GSM406449 GPF_13285928_gacA_mutant_late_rep1 18,441 Macquarie University 2009-05-21 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:G2-gacA mutant P3-wt title:GPF_13285928_gacA_mutant_late_rep1 description:This slide measures gene expression of a gacA mutant as compared to wild type. The gacA mutant of Pf-5 was constructed by replacing 626 bp internal to gacA with aphI, which confers kanamycin resistance.
14 GSM406450 GPF_13285929_gacA_mutant_late_rep2 18,441 Macquarie University 2009-05-21 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:P3-wt G2-gacA mutant title:GPF_13285929_gacA_mutant_late_rep2 description:This slide measures gene expression of a gacA mutant as compared to wild type. The gacA mutant of Pf-5 was constructed by replacing 626 bp internal to gacA with aphI, which confers kanamycin resistance.
15 GSM406451 GPF_13285930_gacA_mutant_late_rep5 18,441 Macquarie University 2009-05-21 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:G5-gacA mutant P6-wt title:GPF_13285930_gacA_mutant_late_rep5 description:This slide measures gene expression of a gacA mutant as compared to wild type. The gacA mutant of Pf-5 was constructed by replacing 626 bp internal to gacA with aphI, which confers kanamycin resistance.
16 GSM406452 GPF_13285932_gacA_mutant_late_rep6 18,441 Macquarie University 2009-05-21 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:P6-wt G5-gacA mutant title:GPF_13285932_gacA_mutant_late_rep6 description:This slide measures gene expression of a gacA mutant as compared to wild type. The gacA mutant of Pf-5 was constructed by replacing 626 bp internal to gacA with aphI, which confers kanamycin resistance.
17 GSM406453 GPF_13285933_gacA_mutant_late_rep3 18,441 Macquarie University 2009-05-21 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:G3-gacA mutant P4-wt title:GPF_13285933_gacA_mutant_late_rep3 description:This slide measures gene expression of a gacA mutant as compared to wild type. The gacA mutant of Pf-5 was constructed by replacing 626 bp internal to gacA with aphI, which confers kanamycin resistance.
18 GSM406454 GPF_13285935_gacA_mutant_late_rep4 18,441 Macquarie University 2009-05-21 [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 23k v1.0 (GPL7620) RNA Pseudomonas,unidentified
Pseudomonas,unidentified		 unclassified source_name:P4-wt G3-gacA mutant title:GPF_13285935_gacA_mutant_late_rep4 description:This slide measures gene expression of a gacA mutant as compared to wild type. The gacA mutant of Pf-5 was constructed by replacing 626 bp internal to gacA with aphI, which confers kanamycin resistance.
19 GSM574346 High N2O center rep1 13,248 The University of Queensland 2010-08-04 [cDNA Array] AGRF Environmental functional gene microarray (E-FGA) (GPL10762) mixed uncultured microorganism,synthetic construct
uncultured microorganism,synthetic construct		 unclassified source_name:Sugarcane soil nPCR title:High N2O center rep1 description:cDNA was normalised with a 'blank' PCR product that was produced from an empty pCR-Blunt vector using M13 primers and amino-allyl dNTPs (Invitrogen) amplified under the same condition as the cDNA. The 'blank' PCR product was called nPCR. The nPCR fragment was labeled with 635 AlexaFlour dye (Invitrogen) before mixing with cDNA sample which had been labeled with 532 AlexaFlour. Both cDNA/nPCR was combined for hybridisation. Central chamber 1 rep 1
20 GSM574347 High N2O center rep2 13,248 The University of Queensland 2010-08-04 [cDNA Array] AGRF Environmental functional gene microarray (E-FGA) (GPL10762) mixed uncultured microorganism,synthetic construct
uncultured microorganism,synthetic construct		 unclassified source_name:Sugarcane soil nPCR title:High N2O center rep2 description:cDNA was normalised with a 'blank' PCR product that was produced from an empty pCR-Blunt vector using M13 primers and amino-allyl dNTPs (Invitrogen) amplified under the same condition as the cDNA. The 'blank' PCR product was called nPCR. The nPCR fragment was labeled with 635 AlexaFlour dye (Invitrogen) before mixing with cDNA sample which had been labeled with 532 AlexaFlour. Both cDNA/nPCR was combined for hybridisation. Central chamber 1 rep 2
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