Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Unclassified
(5,242)

All
(898,944)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

All
(5,242)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(0)

embryo
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(0)

unclassified
(3,021)

all
(5,242)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM1111960	Mono culture type 1_mixed culture type 1 [chemostat cultures]	7,383	Arla Foods	2013-04-01	[Oligo Array] Agilent TIFN Lactobacillus bulgaricus arrays, TB1_8, Version 1 (GPL16855)	RNA	Lactobacillus delbrueckii subsp. bulgaricus,unidentified	unclassified	source_name:Mono Mixed title:Mono culture type 1_mixed culture type 1 [chemostat cultures] description:Mono over Mixed Mono culture L. bulgaricus RNA compared to mixed culture L. bulgaricus + S. cerevisiae RNA (chemostat cultures)
2	GSM1111961	Mixed culture type 1_mono culture type 1 [chemostat cultures]	7,383	Arla Foods	2013-04-01	[Oligo Array] Agilent TIFN Lactobacillus bulgaricus arrays, TB1_8, Version 1 (GPL16855)	RNA	unidentified,Lactobacillus delbrueckii subsp. bulgaricus	unclassified	source_name:Mixed Mono title:Mixed culture type 1_mono culture type 1 [chemostat cultures] description:Mixed over Mono Mixed culture L. bulgaricus + S. cerevisiae RNA compared to mono culture L. bulgaricus RNA (chemostat cultures)
3	GSM1111962	Mono culture type 2_mixed culture type 2 [batch cultures]	7,383	Arla Foods	2013-04-01	[Oligo Array] Agilent TIFN Lactobacillus bulgaricus arrays, TB1_8, Version 1 (GPL16855)	RNA	Lactobacillus delbrueckii subsp. bulgaricus,unidentified	unclassified	source_name:Lbul mono Lbul/Scer title:Mono culture type 2_mixed culture type 2 [batch cultures] description:Lbul mono over Lbul/Scer Mono culture L. bulgaricus RNA compared to mono culture L. bulgaricus RNA mixed with mono culture S. cerevisiae RNA (batch cultures)
4	GSM1111963	Mixed culture type 2_mono culture type 2 [batch cultures]	7,383	Arla Foods	2013-04-01	[Oligo Array] Agilent TIFN Lactobacillus bulgaricus arrays, TB1_8, Version 1 (GPL16855)	RNA	unidentified,Lactobacillus delbrueckii subsp. bulgaricus	unclassified	source_name:Lbul/Scer Lbul mono title:Mixed culture type 2_mono culture type 2 [batch cultures] description:Lbul/Scer over Lbul mono Mono culture L. bulgaricus RNA mixed with mono culture S. cerevisiae RNA compared to mono culture L. bulgaricus RNA (batch cultures)
5	GSM1112032	mRNAseq_STM2683_TY	0	CIRAD	2013-04-01	[HT Sequencing] Illumina HiSeq 2000 (Mesorhizobium metallidurans STM 2683) (GPL16949)	SRA	Mesorhizobium metallidurans,unidentified	unclassified	source_name:M. metallidurans STM 2683 bacteria, control treated title:mRNAseq_STM2683_TY description:mRNA
6	GSM1112033	mRNAseq_STM2683_Zn	0	CIRAD	2013-04-01	[HT Sequencing] Illumina HiSeq 2000 (Mesorhizobium metallidurans STM 2683) (GPL16949)	SRA	Mesorhizobium metallidurans,unidentified	unclassified	source_name:M. metallidurans STM 2683 bacteria, zinc treated title:mRNAseq_STM2683_Zn description:mRNA
7	GSM1112034	mRNAseq_STM2683_Cd	0	CIRAD	2013-04-01	[HT Sequencing] Illumina HiSeq 2000 (Mesorhizobium metallidurans STM 2683) (GPL16949)	SRA	Mesorhizobium metallidurans,unidentified	unclassified	source_name:M. metallidurans STM 2683 bacteria, cadmium treated title:mRNAseq_STM2683_Cd description:mRNA
8	GSM1112035	mRNAseq_STM4661_TY	0	CIRAD	2013-04-01	[HT Sequencing] Illumina HiSeq 2000 (Mesorhizobium metallidurans STM 4661) (GPL16950)	SRA	Mesorhizobium metallidurans,unidentified	unclassified	source_name:M. metallidurans STM 4661 bacteria, control treated title:mRNAseq_STM4661_TY description:mRNA
9	GSM1112036	mRNAseq_STM4661_Zn	0	CIRAD	2013-04-01	[HT Sequencing] Illumina HiSeq 2000 (Mesorhizobium metallidurans STM 4661) (GPL16950)	SRA	Mesorhizobium metallidurans,unidentified	unclassified	source_name:M. metallidurans STM 4661 bacteria, zinc treated title:mRNAseq_STM4661_Zn description:mRNA
10	GSM1112037	mRNAseq_STM4661_Cd	0	CIRAD	2013-04-01	[HT Sequencing] Illumina HiSeq 2000 (Mesorhizobium metallidurans STM 4661) (GPL16950)	SRA	Mesorhizobium metallidurans,unidentified	unclassified	source_name:M. metallidurans STM 4661 bacteria, cadmium treated title:mRNAseq_STM4661_Cd description:mRNA
11	GSM1110201	mock lymphatic endothelial cell (LEC) replicate 2	13,484	Novartis Institutes for BioMedical Research	2013-03-28	[Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894)	RNA	Homo sapiens,Human herpesvirus 8	pooled	mock lymphatic endothelial cell (LEC) replicate 2
12	GSM1110202	infected lymphatic endothelial cell (LEC) replicate 2	13,484	Novartis Institutes for BioMedical Research	2013-03-28	[Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894)	RNA	unidentified,Homo sapiens,Human herpesvirus 8	pooled	infected lymphatic endothelial cell (LEC) replicate 2
13	GSM1110203	mock blood endothelial cell (BEC) replicate 2	13,484	Novartis Institutes for BioMedical Research	2013-03-28	[Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894)	RNA	Homo sapiens,Human herpesvirus 8	pooled	mock blood endothelial cell (BEC) replicate 2
14	GSM1110204	infected blood endothelial cell (BEC) replicate 2	13,484	Novartis Institutes for BioMedical Research	2013-03-28	[Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894)	RNA	unidentified,Homo sapiens,Human herpesvirus 8	pooled	infected blood endothelial cell (BEC) replicate 2
15	GSM1110205	mock human umbilical vein endothelial cell (HUVEC)	13,484	Novartis Institutes for BioMedical Research	2013-03-28	[Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894)	RNA	Homo sapiens,Human herpesvirus 8	vein	mock infected HUVEC Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic.
16	GSM1110206	infected human umbilical vein endothelial cell (HUVEC)	13,484	Novartis Institutes for BioMedical Research	2013-03-28	[Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894)	RNA	unidentified,Homo sapiens,Human herpesvirus 8	vein	HUVEC stably infected with rKSHV.219 Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic.
17	GSM1110207	mock human aortic endothelial cell (HAEC)	13,484	Novartis Institutes for BioMedical Research	2013-03-28	[Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894)	RNA	Homo sapiens,Human herpesvirus 8	artery/aorta	mock human aortic endothelial cell (HAEC)
18	GSM1110208	infected human aortic endothelial cell (HAEC)	13,484	Novartis Institutes for BioMedical Research	2013-03-28	[Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894)	RNA	unidentified,Homo sapiens,Human herpesvirus 8	artery/aorta	infected human aortic endothelial cell (HAEC)
19	GSM1110197	mock lymphatic endothelial cell (LEC) replicate 1	13,349	Novartis Institutes for BioMedical Research	2013-03-28	[Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894)	RNA	Homo sapiens,Human herpesvirus 8	pooled	mock lymphatic endothelial cell (LEC) replicate 1
20	GSM1110198	infected lymphatic endothelial cell (LEC) replicate 1	13,349	Novartis Institutes for BioMedical Research	2013-03-28	[Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894)	RNA	unidentified,Homo sapiens,Human herpesvirus 8	pooled	infected lymphatic endothelial cell (LEC) replicate 1

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