Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(516,316)		   Primates
(5,042)		   Rodents
(188,439)		   Mammals
(16,727)		   Vertebrates
(18,617)		   Invertebrates
(38,231)		   Plants
(93,098)		   Bacteria
(39,426)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,385)		   All
(924,376)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(532)		   Tiling Array
(47)		   cDNA Array
(1,208)		   Oligo Array
(2,157)		   Bead Array
(576)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(771)		   Other
(82)		   All
(5,385)		  
  brain
(165)		   blood
(420)		   connective
(224)		   reproductive
(11)		   muscular
(94)		   digestive
(543)		   liver
(178)		   lung
(69)		   urinary
(40)		   endo/exo-crine
(85)		   embryo
(20)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(6)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(6)		   pooled
(363)		   unclassified
(3,161)		   all
(5,385)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM80493 non-contaminated soil_rep1 202 Catholic University of Louvain 2005-10-28 [Oligo Array] 16S and 23S rRNA CodeLink Microarray (GPL3032) genomic unidentified
unidentified		 unclassified source_name:In vitro transcribed product of 16S rDNA amplified from an uncontaminated soil sample title:non-contaminated soil_rep1 description:Dissociation curves were generated by increasing the temperature of the microarray (1°C/min) from 20°C to 68°C and recording signal intensities every 1°C or 2°C (Urakawa et al. 2003, Appl. Environ. Microbiol. 68:235-244).
2 GSM80494 non-contaminated soil_rep2 202 Catholic University of Louvain 2005-10-28 [Oligo Array] 16S and 23S rRNA CodeLink Microarray (GPL3032) genomic unidentified
unidentified		 unclassified source_name:In vitro transcribed product of 16S rDNA amplified from an uncontaminated soil sample title:non-contaminated soil_rep2 description:Dissociation curves were generated by increasing the temperature of the microarray (1°C/min) from 20°C to 68°C and recording signal intensities every 1°C or 2°C (Urakawa et al. 2003, Appl. Environ. Microbiol. 68:235-244).
3 GSM80495 non-contaminated soil_rep3 202 Catholic University of Louvain 2005-10-28 [Oligo Array] 16S and 23S rRNA CodeLink Microarray (GPL3032) genomic unidentified
unidentified		 unclassified source_name:In vitro transcribed product of 16S rDNA amplified from an uncontaminated soil sample title:non-contaminated soil_rep3 description:Dissociation curves were generated by increasing the temperature of the microarray (1°C/min) from 20°C to 68°C and recording signal intensities every 1°C or 2°C (Urakawa et al. 2003, Appl. Environ. Microbiol. 68:235-244).
4 GSM80496 TNT-contaminated soil_rep1 202 Catholic University of Louvain 2005-10-28 [Oligo Array] 16S and 23S rRNA CodeLink Microarray (GPL3032) genomic unidentified
unidentified		 unclassified source_name:In vitro transcribed product of 16S rDNA amplified from an TNT-contaminated soil sample title:TNT-contaminated soil_rep1 description:Dissociation curves were generated by increasing the temperature of the microarray (1°C/min) from 20°C to 68°C and recording signal intensities every 1°C or 2°C (Urakawa et al. 2003, Appl. Environ. Microbiol. 68:235-244).
5 GSM80497 TNT-contaminated soil_rep2 202 Catholic University of Louvain 2005-10-28 [Oligo Array] 16S and 23S rRNA CodeLink Microarray (GPL3032) genomic unidentified
unidentified		 unclassified source_name:In vitro transcribed product of 16S rDNA amplified from an TNT-contaminated soil sample title:TNT-contaminated soil_rep2 description:Dissociation curves were generated by increasing the temperature of the microarray (1°C/min) from 20°C to 68°C and recording signal intensities every 1°C or 2°C (Urakawa et al. 2003, Appl. Environ. Microbiol. 68:235-244).
6 GSM80498 TNT-contaminated soil_rep3 202 Catholic University of Louvain 2005-10-28 [Oligo Array] 16S and 23S rRNA CodeLink Microarray (GPL3032) genomic unidentified
unidentified		 unclassified source_name:In vitro transcribed product of 16S rDNA amplified from an TNT-contaminated soil sample title:TNT-contaminated soil_rep3 description:Dissociation curves were generated by increasing the temperature of the microarray (1°C/min) from 20°C to 68°C and recording signal intensities every 1°C or 2°C (Urakawa et al. 2003, Appl. Environ. Microbiol. 68:235-244).
7 GSM79776 Uncontaminated soil_rep1 270 Catholic University of Louvain 2005-10-24 [Oligo Array] 16S and 23S rRNA Gel Pad Microarray (GPL2993) genomic unidentified
unidentified		 unclassified source_name:In vitro transcribed product of 16S rDNA amplified from an uncontaminated soil sample title:Uncontaminated soil_rep1 description:Dissociation curves were generated by increasing the temperature of the microarray (1°C/min) from 20°C to 68°C and recording signal intensities every 1°C or 2°C (Urakawa et al. 2003, Appl. Environ. Microbiol. 68:235-244).
8 GSM79777 Uncontaminated soil_rep2 270 Catholic University of Louvain 2005-10-24 [Oligo Array] 16S and 23S rRNA Gel Pad Microarray (GPL2993) genomic unidentified
unidentified		 unclassified source_name:In vitro transcribed product of 16S rDNA amplified from an uncontaminated soil sample title:Uncontaminated soil_rep2 description:Dissociation curves were generated by increasing the temperature of the microarray (1°C/min) from 20°C to 68°C and recording signal intensities every 1°C or 2°C (Urakawa et al. 2003, Appl. Environ. Microbiol. 68:235-244).
9 GSM79778 Uncontaminated soil_rep3 270 Catholic University of Louvain 2005-10-24 [Oligo Array] 16S and 23S rRNA Gel Pad Microarray (GPL2993) genomic unidentified
unidentified		 unclassified source_name:In vitro transcribed product of 16S rDNA amplified from an uncontaminated soil sample title:Uncontaminated soil_rep3 description:Dissociation curves were generated by increasing the temperature of the microarray (1°C/min) from 20°C to 68°C and recording signal intensities every 1°C or 2°C (Urakawa et al. 2003, Appl. Environ. Microbiol. 68:235-244).
10 GSM79779 2,4,6-trinitrotoluene (TNT)-contaminated soil_rep1 270 Catholic University of Louvain 2005-10-24 [Oligo Array] 16S and 23S rRNA Gel Pad Microarray (GPL2993) genomic unidentified
unidentified		 unclassified source_name:In vitro transcribed product of 16S rDNA amplified from an TNT-contaminated soil sample title:2,4,6-trinitrotoluene (TNT)-contaminated soil_rep1 description:Dissociation curves were generated by increasing the temperature of the microarray (1°C/min) from 20°C to 68°C and recording signal intensities every 1°C or 2°C (Urakawa et al. 2003, Appl. Environ. Microbiol. 68:235-244).
11 GSM79780 2,4,6-trinitrotoluene (TNT)-contaminated soil_rep2 270 Catholic University of Louvain 2005-10-24 [Oligo Array] 16S and 23S rRNA Gel Pad Microarray (GPL2993) genomic unidentified
unidentified		 unclassified source_name:In vitro transcribed product of 16S rDNA amplified from an TNT-contaminated soil sample title:2,4,6-trinitrotoluene (TNT)-contaminated soil_rep2 description:Dissociation curves were generated by increasing the temperature of the microarray (1°C/min) from 20°C to 68°C and recording signal intensities every 1°C or 2°C (Urakawa et al. 2003, Appl. Environ. Microbiol. 68:235-244).
12 GSM79781 2,4,6-trinitrotoluene (TNT)-contaminated soil_rep3 270 Catholic University of Louvain 2005-10-24 [Oligo Array] 16S and 23S rRNA Gel Pad Microarray (GPL2993) genomic unidentified
unidentified		 unclassified source_name:In vitro transcribed product of 16S rDNA amplified from an TNT-contaminated soil sample title:2,4,6-trinitrotoluene (TNT)-contaminated soil_rep3 description:Dissociation curves were generated by increasing the temperature of the microarray (1°C/min) from 20°C to 68°C and recording signal intensities every 1°C or 2°C (Urakawa et al. 2003, Appl. Environ. Microbiol. 68:235-244).
13 GSM266678 vaccinia_virus_infected 0 Mayo Clinic 2008-02-15 [Other] 2D-LC MS/MS Analyses of HLA Class I Peptides Isolated from B-cells Infected with Vaccinia Virus (GPL6461) protein Homo sapiens,Vaccinia virus
Homo sapiens,Vaccinia virus		 lymphnode human B cells
14 GSM266679 control_non_infected 0 Mayo Clinic 2008-02-15 [Other] 2D-LC MS/MS Analyses of HLA Class I Peptides Isolated from B-cells Infected with Vaccinia Virus (GPL6461) protein Homo sapiens,Bos taurus
Homo sapiens,Bos taurus		 lymphnode human B cells
15 GSM266680 instrument_blanks 0 Mayo Clinic 2008-02-15 [Other] 2D-LC MS/MS Analyses of HLA Class I Peptides Isolated from B-cells Infected with Vaccinia Virus (GPL6461) protein unidentified
unidentified		 unclassified source_name:instrument_blanks title:instrument_blanks description:Since the analyses are a series of SCX fractions from the same peptide preparations, the blanks serve to demonstrate the amount of carryover, but have essentially no effect on conclusions regarding the results, since subsequent analyses are of different fractions from the same sample.
16 GSM139137 MIT/WI Bartel C.elegans 454 2006 181,668 Whitehead Institute for Biomedical Research and MIT 2006-10-07 [HT Sequencing] 454 GS (Caenorhabditis elegans; Escherichia coli) (GPL11099) SRA Escherichia coli,Caenorhabditis elegans
Escherichia coli,Caenorhabditis elegans		 unclassified source_name:mixed-stage Caenorhabditis elegans with contaminating Escherichia coli title:MIT/WI Bartel C.elegans 454 2006 description:small RNAs
17 GSM429420 454-sequenced P19 silencing suppressor mutant Cymbidium Ringspot Virus (Cym19stop)-derived siRNAs 38,444 University of East Anglia 2009-07-17 [HT Sequencing] 454 GS (Cymbidium ringspot virus; Nicotiana benthamiana) (GPL15026) SRA Nicotiana benthamiana,Cymbidium ringspot virus
Nicotiana benthamiana,Cymbidium ringspot virus		 unclassified source_name:Early systemic leaves of Cym19stop-infected Nicotiana benthamiana title:454-sequenced P19 silencing suppressor mutant Cymbidium Ringspot Virus (Cym19stop)-derived siRNAs description:Cym19stop-derived small RNAs from early systemic leaves of Nicotiana benthamiana.
18 GSM429419 454-sequenced Cymbidium Ringspot Virus (CymRSV)-derived siRNAs 33,682 University of East Anglia 2009-07-17 [HT Sequencing] 454 GS (Cymbidium ringspot virus; Nicotiana benthamiana) (GPL15026) SRA Nicotiana benthamiana,Cymbidium ringspot virus
Nicotiana benthamiana,Cymbidium ringspot virus		 unclassified source_name:Early systemic leaves of CymRSV-infected Nicotiana benthamiana title:454-sequenced Cymbidium Ringspot Virus (CymRSV)-derived siRNAs description:CymRSV-derived small RNAs from early systemic leaves of Nicotiana benthamiana.
19 GSM871951 Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 20% qPCR quantified DNA from A. fisheri (rep. a) 0 Helmholtz-Centre Munich 2012-02-08 [HT Sequencing] 454 GS FLX (Aliivibrio fischeri; environmental samples) (GPL15201) SRA Aliivibrio fischeri,environmental samples,prokaryotic environmental samples
Aliivibrio fischeri,environmental samples,prokaryotic environmental samples		 unclassified source_name:Aquifer Sediment title:Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 20% qPCR quantified DNA from A. fisheri (rep. a) description:small rRNA were amplified using specific PCR primers from total nucleic acids extracted from environmental samples amended with increasing concentration of external DNA reference (A. fisheri)
20 GSM871952 Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 2% qPCR quantified DNA from A. fisheri (rep. a) 0 Helmholtz-Centre Munich 2012-02-08 [HT Sequencing] 454 GS FLX (Aliivibrio fischeri; environmental samples) (GPL15201) SRA Aliivibrio fischeri,environmental samples,prokaryotic environmental samples
Aliivibrio fischeri,environmental samples,prokaryotic environmental samples		 unclassified source_name:Aquifer Sediment title:Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 2% qPCR quantified DNA from A. fisheri (rep. a) description:small rRNA were amplified using specific PCR primers from total nucleic acids extracted from environmental samples amended with increasing concentration of external DNA reference (A. fisheri)
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