Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(28,032)		   Primates
(191)		   Rodents
(8,356)		   Mammals
(1,530)		   Vertebrates
(561)		   Invertebrates
(895)		   Plants
(4,458)		   Bacteria
(2,513)		   Viruses
(10)		   Phages
(0)		   Unclassified
(167)		   All
(46,739)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(0)		   cDNA Array
(38)		   Oligo Array
(18)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(35)		   Other
(76)		   All
(167)		  
  brain
(4)		   blood
(23)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(11)		   lung
(1)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(3)		   unclassified
(125)		   all
(167)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM530623 wild type_non-induced_rep1 5,344 Ruhr-Universität Bochum 2010-04-06 [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) RNA unidentified
unidentified		 unclassified source_name:A. tumefaciens_wild type_non-induced title:wild type_non-induced_rep1 description:This sample is of wild type Agrobacterium tumefaciens str. C58 grown under non-induced conditions. It is the first of three wild-type biological replicates used in this experiment, each from separate cultures.
2 GSM530624 wild type_non-induced_rep2 5,344 Ruhr-Universität Bochum 2010-04-06 [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) RNA unidentified
unidentified		 unclassified source_name:A. tumefaciens_wild type_non-induced title:wild type_non-induced_rep2 description:This sample is of wild type Agrobacterium tumefaciens str. C58 grown under non-induced conditions. It is the second of three wild-type biological replicates used in this experiment, each from separate cultures.
3 GSM530625 wild type_non-induced_rep3 5,344 Ruhr-Universität Bochum 2010-04-06 [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) RNA unidentified
unidentified		 unclassified source_name:A. tumefaciens_wild type_non-induced title:wild type_non-induced_rep3 description:This sample is of wild type Agrobacterium tumefaciens str. C58 grown under non-induced conditions. It is the third of three wild-type biological replicates used in this experiment, each from separate cultures.
4 GSM530626 wild type_virulence-induced_rep1 5,344 Ruhr-Universität Bochum 2010-04-06 [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) RNA unidentified
unidentified		 unclassified source_name:A. tumefaciens_wild type_virulence-induced title:wild type_virulence-induced_rep1 description:This sample is of wild type Agrobacterium tumefaciens str. C58 grown under virulence-induced conditions. It is the first of three wild-type biological replicates used in this experiment, each from separate cultures.
5 GSM530627 wild type_virulence-induced_rep2 5,344 Ruhr-Universität Bochum 2010-04-06 [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) RNA unidentified
unidentified		 unclassified source_name:A. tumefaciens_wild type_virulence-induced title:wild type_virulence-induced_rep2 description:This sample is of wild type Agrobacterium tumefaciens str. C58 grown under virulence-induced conditions. It is the second of three wild-type biological replicates used in this experiment, each from separate cultures.
6 GSM530628 wild type_virulence-induced_rep3 5,344 Ruhr-Universität Bochum 2010-04-06 [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) RNA unidentified
unidentified		 unclassified source_name:A. tumefaciens_wild type_virulence-induced title:wild type_virulence-induced_rep3 description:This sample is of wild type Agrobacterium tumefaciens str. C58 grown under virulence-induced conditions. It is the third of three wild-type biological replicates used in this experiment, each from separate cultures.
7 GSM530629 PC-deficient mutant_non-induced_rep1 5,344 Ruhr-Universität Bochum 2010-04-06 [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) RNA unidentified
unidentified		 unclassified source_name:A. tumefaciens_PC-deficient mutant_non-induced title:PC-deficient mutant_non-induced_rep1 description:This sample is of Agrobacterium tumefaciens str. C58 DpmtA Dpcs mutant in which the PC-biosynthesis genes pmtA (ATU0300) and pcs (ATU1793) are deleted. The cells were grown under non-induced conditions. It is the first of three mutant biological replicates used in this experiment, each from separate cultures.
8 GSM530630 PC-deficient mutant_non-induced_rep2 5,344 Ruhr-Universität Bochum 2010-04-06 [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) RNA unidentified
unidentified		 unclassified source_name:A. tumefaciens_PC-deficient mutant_non-induced title:PC-deficient mutant_non-induced_rep2 description:This sample is of Agrobacterium tumefaciens str. C58 DpmtA Dpcs mutant in which the PC-biosynthesis genes pmtA (ATU0300) and pcs (ATU1793) are deleted. The cells were grown under non-induced conditions. It is the second of three mutant biological replicates used in this experiment, each from separate cultures.
9 GSM530631 PC-deficient mutant_non-induced_rep3 5,344 Ruhr-Universität Bochum 2010-04-06 [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) RNA unidentified
unidentified		 unclassified source_name:A. tumefaciens_PC-deficient mutant_non-induced title:PC-deficient mutant_non-induced_rep3 description:This sample is of Agrobacterium tumefaciens str. C58 DpmtA Dpcs mutant in which the PC-biosynthesis genes pmtA (ATU0300) and pcs (ATU1793) are deleted. The cells were grown under non-induced conditions. It is the third of three mutant biological replicates used in this experiment, each from separate cultures.
10 GSM530632 PC-deficient mutant_virulence-induced_rep1 5,344 Ruhr-Universität Bochum 2010-04-06 [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) RNA unidentified
unidentified		 unclassified source_name:A. tumefaciens_PC-deficient mutant_virulence-induced title:PC-deficient mutant_virulence-induced_rep1 description:This sample is of Agrobacterium tumefaciens str. C58 DpmtA Dpcs mutant in which the PC-biosynthesis genes pmtA (ATU0300) and pcs (ATU1793) are deleted. The cells were grown under virulence-induced conditions. It is the first of three mutant biological replicates used in this experiment, each from separate cultures.
11 GSM530633 PC-deficient mutant_virulence-induced_rep2 5,344 Ruhr-Universität Bochum 2010-04-06 [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) RNA unidentified
unidentified		 unclassified source_name:A. tumefaciens_PC-deficient mutant_virulence-induced title:PC-deficient mutant_virulence-induced_rep2 description:This sample is of Agrobacterium tumefaciens str. C58 DpmtA Dpcs mutant in which the PC-biosynthesis genes pmtA (ATU0300) and pcs (ATU1793) are deleted. The cells were grown under virulence-induced conditions. It is the second of three mutant biological replicates used in this experiment, each from separate cultures.
12 GSM530634 PC-deficient mutant_virulence-induced_rep3 5,344 Ruhr-Universität Bochum 2010-04-06 [Oligo Array] Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array (GPL10294) RNA unidentified
unidentified		 unclassified source_name:A. tumefaciens_PC-deficient mutant_virulence-induced title:PC-deficient mutant_virulence-induced_rep3 description:This sample is of Agrobacterium tumefaciens str. C58 DpmtA Dpcs mutant in which the PC-biosynthesis genes pmtA (ATU0300) and pcs (ATU1793) are deleted. The cells were grown under virulence-induced conditions. It is the third of three mutant biological replicates used in this experiment, each from separate cultures.
13 GSM397625 liver and spike ins vs. synthetic miRNA pool (6) 1,471 Miltenyi Biotec GmbH 2009-04-24 [cDNA Array] miRXploreTM microarrays (872) (GPL8441) mixed Mus musculus,synthetic construct
Mus musculus,synthetic construct		 liver/hepato liver + 75 synthetic RNAs (spike ins) synthetic miRNA pool
14 GSM397586 CD34(+)/CD133(-) cells vs. synthetic miRNA pool (1) 1,471 Miltenyi Biotec GmbH 2009-04-24 [cDNA Array] miRXploreTM microarrays (865) (GPL8436) mixed Homo sapiens,synthetic construct
Homo sapiens,synthetic construct		 bone marrow CD34(+)/CD133(-)/bone marrow synthetic miRNA pool
15 GSM397587 CD34(+)/CD133(-) cells vs. synthetic miRNA pool (2) 1,471 Miltenyi Biotec GmbH 2009-04-24 [cDNA Array] miRXploreTM microarrays (865) (GPL8436) mixed Homo sapiens,synthetic construct
Homo sapiens,synthetic construct		 bone marrow CD34(+)/CD133(-)/bone marrow synthetic miRNA pool
16 GSM558005 CD133(+) cells of donor B vs. synthetic miRNA pool 1,471 Miltenyi Biotec GmbH 2010-06-20 [cDNA Array] miRXploreTM microarrays (865) (GPL8436) mixed Homo sapiens,synthetic construct
Homo sapiens,synthetic construct		 bone marrow CD133(+)/bone marrow synthetic miRNA pool
17 GSM558006 CD34(+)/CD133(-) cells of donor B vs. synthetic miRNA pool 1,471 Miltenyi Biotec GmbH 2010-06-20 [cDNA Array] miRXploreTM microarrays (865) (GPL8436) mixed Homo sapiens,synthetic construct
Homo sapiens,synthetic construct		 bone marrow CD34(+)/CD133(-)/bone marrow synthetic miRNA pool
18 GSM558007 CD34(-)/CD133(-) cells without RBCs of donor B vs. synthetic miRNA pool 1,471 Miltenyi Biotec GmbH 2010-06-20 [cDNA Array] miRXploreTM microarrays (865) (GPL8436) mixed Homo sapiens,synthetic construct
Homo sapiens,synthetic construct		 bone marrow CD34(-)/CD133(-) without RBCs/bone marrow synthetic miRNA pool
19 GSM558008 CD34(-)/CD133(-) cells with RBCs of donor B vs. synthetic miRNA pool 1,471 Miltenyi Biotec GmbH 2010-06-20 [cDNA Array] miRXploreTM microarrays (865) (GPL8436) mixed Homo sapiens,synthetic construct
Homo sapiens,synthetic construct		 bone marrow CD34(-)/CD133(-) with RBCs/bone marrow synthetic miRNA pool
20 GSM558009 CD34(-)/CD133(-) cells with RBCs of donor C vs. synthetic miRNA pool 1,471 Miltenyi Biotec GmbH 2010-06-20 [cDNA Array] miRXploreTM microarrays (865) (GPL8436) mixed Homo sapiens,synthetic construct
Homo sapiens,synthetic construct		 bone marrow CD34(-)/CD133(-) with RBCs/bone marrow synthetic miRNA pool
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