Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(532)		   Tiling Array
(44)		   cDNA Array
(1,208)		   Oligo Array
(2,102)		   Bead Array
(576)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(762)		   Other
(6)		   All
(5,242)		  
  brain
(165)		   blood
(420)		   connective
(224)		   reproductive
(11)		   muscular
(94)		   digestive
(543)		   liver
(178)		   lung
(69)		   urinary
(40)		   endo/exo-crine
(85)		   embryo
(19)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(6)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(6)		   pooled
(361)		   unclassified
(3,021)		   all
(5,242)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM611103 Cucumber_gall_infected 5,581,589 Hunan Agricultural University 2010-10-20 [HT Sequencing] Illumina Genome Analyzer (Capsicum annuum; Meloidogyne incognita) (GPL11112) SRA Capsicum annuum,Meloidogyne incognita
Capsicum annuum,Meloidogyne incognita		 unclassified source_name:M. incognita from infected gall of cucumber root title:Cucumber_gall_infected description:GC library.
2 GSM498722 CMV delta2b in Arabidopsis thaliana (col), replicate 1,972,779 UC Riverside 2010-01-20 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana; Cucumber mosaic virus (strain FNY)) (GPL9951) SRA unidentified
unidentified		 unclassified source_name:leaves of wt Arabidopsis thaliana infected with CMVf-Δ2b title:CMV delta2b in Arabidopsis thaliana (col), replicate description:total small RNAs in systemically infected leaves of A. thaliana barcode: ATC
3 GSM498724 CMV delta2b in rdr1 mutant of Arabidopsis thaliana, replicate 1,515,008 UC Riverside 2010-01-20 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana; Cucumber mosaic virus (strain FNY)) (GPL9951) SRA unidentified
unidentified		 unclassified source_name:leaves of mutant Arabidopsis thaliana infected with CMVf-Δ2b title:CMV delta2b in rdr1 mutant of Arabidopsis thaliana, replicate description:total small RNAs in systemically infected leaves of A. thaliana barcode: TAC
4 GSM498721 CMV delta2b in Arabidopsis thaliana (col) 588,232 UC Riverside 2010-01-20 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana; Cucumber mosaic virus (strain FNY)) (GPL9951) SRA unidentified
unidentified		 unclassified source_name:leaves of wt Arabidopsis thaliana infected with CMVf-Δ2b title:CMV delta2b in Arabidopsis thaliana (col) description:total small RNAs in systemically infected leaves of A. thaliana barcode: ATC
5 GSM498723 CMV delta2b in rdr1 mutant of Arabidopsis thaliana 444,973 UC Riverside 2010-01-20 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana; Cucumber mosaic virus (strain FNY)) (GPL9951) SRA unidentified
unidentified		 unclassified source_name:leaves of mutant Arabidopsis thaliana infected with CMVf-Δ2b title:CMV delta2b in rdr1 mutant of Arabidopsis thaliana description:total small RNAs in systemically infected leaves of A. thaliana barcode: CGT
6 GSM498725 CMV delta2b in rdr1/2/6 mutant of Arabidopsis thaliana 390,560 UC Riverside 2010-01-20 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana; Cucumber mosaic virus (strain FNY)) (GPL9951) SRA unidentified
unidentified		 unclassified source_name:leaves of mutant Arabidopsis thaliana infected with CMVf-Δ2b title:CMV delta2b in rdr1/2/6 mutant of Arabidopsis thaliana description:total small RNAs in systemically infected leaves of A. thaliana barcode: CGT
7 GSM429416 P19 silencing suppressor mutant Cymbidium Ringspot Virus (Cym19stop)-derived de- and re-phosphorylated siRNAs 339,343 University of East Anglia 2009-07-17 [HT Sequencing] Illumina Genome Analyzer (Cymbidium ringspot virus; Nicotiana benthamiana) (GPL10313) SRA Nicotiana benthamiana,Cymbidium ringspot virus
Nicotiana benthamiana,Cymbidium ringspot virus		 unclassified source_name:Early systemic leaves of Cym19stop-infected Nicotiana benthamiana title:P19 silencing suppressor mutant Cymbidium Ringspot Virus (Cym19stop)-derived de- and re-phosphorylated siRNAs description:Cym19stop-derived small RNAs from systemic leaves of Nicotiana benthamiana. The eluted sRNA fraction was de-phosphorylated with Shrimp Alkaline Phosphatase and re-phosphorylated with T4 Polynucleotide Kinase. The resulting sRNAs were used in subsequent reactions.
8 GSM429418 Cymbidium Ringspot Virus (CymRSV)-derived de-phosphorylated and re-phosphorylated siRNAs 333,669 University of East Anglia 2009-07-17 [HT Sequencing] Illumina Genome Analyzer (Cymbidium ringspot virus; Nicotiana benthamiana) (GPL10313) SRA Nicotiana benthamiana,Cymbidium ringspot virus
Nicotiana benthamiana,Cymbidium ringspot virus		 unclassified source_name:Early systemic leaves of CymRSV-infected Nicotiana benthamiana title:Cymbidium Ringspot Virus (CymRSV)-derived de-phosphorylated and re-phosphorylated siRNAs description:CymRSV-derived small RNAs from early systemic leaves of Nicotiana benthamiana. The eluted sRNA fraction was de-phosphorylated with Shrimp Alkaline Phosphatase and re-phosphorylated with T4 Polynucleotide Kinase. The resulting sRNAs were used in subsequent reactions.
9 GSM429417 P19 silencing suppressor mutant Cymbidium Ringspot Virus (Cym19stop)-derived siRNAs 320,342 University of East Anglia 2009-07-17 [HT Sequencing] Illumina Genome Analyzer (Cymbidium ringspot virus; Nicotiana benthamiana) (GPL10313) SRA Nicotiana benthamiana,Cymbidium ringspot virus
Nicotiana benthamiana,Cymbidium ringspot virus		 unclassified source_name:Early systemic leaves of Cym19stop-infected Nicotiana benthamiana title:P19 silencing suppressor mutant Cymbidium Ringspot Virus (Cym19stop)-derived siRNAs description:Cym19stop-derived small RNAs from systemic leaves of Nicotiana benthamiana.
10 GSM429415 Cymbidium Ringspot Virus (CymRSV)-derived siRNAs 211,530 University of East Anglia 2009-07-17 [HT Sequencing] Illumina Genome Analyzer (Cymbidium ringspot virus; Nicotiana benthamiana) (GPL10313) SRA Nicotiana benthamiana,Cymbidium ringspot virus
Nicotiana benthamiana,Cymbidium ringspot virus		 unclassified source_name:Early systemic leaves of CymRSV-infected Nicotiana benthamiana title:Cymbidium Ringspot Virus (CymRSV)-derived siRNAs description:CymRSV-derived small RNAs from early systemic leaves of Nicotiana benthamiana.
11 GSM139137 MIT/WI Bartel C.elegans 454 2006 181,668 Whitehead Institute for Biomedical Research and MIT 2006-10-07 [HT Sequencing] 454 GS (Caenorhabditis elegans; Escherichia coli) (GPL11099) SRA Escherichia coli,Caenorhabditis elegans
Escherichia coli,Caenorhabditis elegans		 unclassified source_name:mixed-stage Caenorhabditis elegans with contaminating Escherichia coli title:MIT/WI Bartel C.elegans 454 2006 description:small RNAs
12 GSM498726 CMV delta2b in rdr1/2/6 mutant of Arabidopsis thaliana, replicate 42,027 UC Riverside 2010-01-20 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana; Cucumber mosaic virus (strain FNY)) (GPL9951) SRA unidentified
unidentified		 unclassified source_name:leaves of mutant Arabidopsis thaliana infected with CMVf-Δ2b title:CMV delta2b in rdr1/2/6 mutant of Arabidopsis thaliana, replicate description:total small RNAs in systemically infected leaves of A. thaliana barcode: TAC
13 GSM429420 454-sequenced P19 silencing suppressor mutant Cymbidium Ringspot Virus (Cym19stop)-derived siRNAs 38,444 University of East Anglia 2009-07-17 [HT Sequencing] 454 GS (Cymbidium ringspot virus; Nicotiana benthamiana) (GPL15026) SRA Nicotiana benthamiana,Cymbidium ringspot virus
Nicotiana benthamiana,Cymbidium ringspot virus		 unclassified source_name:Early systemic leaves of Cym19stop-infected Nicotiana benthamiana title:454-sequenced P19 silencing suppressor mutant Cymbidium Ringspot Virus (Cym19stop)-derived siRNAs description:Cym19stop-derived small RNAs from early systemic leaves of Nicotiana benthamiana.
14 GSM429419 454-sequenced Cymbidium Ringspot Virus (CymRSV)-derived siRNAs 33,682 University of East Anglia 2009-07-17 [HT Sequencing] 454 GS (Cymbidium ringspot virus; Nicotiana benthamiana) (GPL15026) SRA Nicotiana benthamiana,Cymbidium ringspot virus
Nicotiana benthamiana,Cymbidium ringspot virus		 unclassified source_name:Early systemic leaves of CymRSV-infected Nicotiana benthamiana title:454-sequenced Cymbidium Ringspot Virus (CymRSV)-derived siRNAs description:CymRSV-derived small RNAs from early systemic leaves of Nicotiana benthamiana.
15 GSM280089 S2cell (AGO2IP), Flock house virus 20,338 Cold Spring Harbor Labs 2008-04-07 [HT Sequencing] Illumina Genome Analyzer (Flock house virus) (GPL9402) SRA Drosophila melanogaster,Flock house virus
Drosophila melanogaster,Flock house virus		 unclassified source_name:small RNA title:S2cell (AGO2IP), Flock house virus description:small RNA from immunoprecipitate
16 GSM280090 S2cell (AGO1IP), Flock house virus 20,338 Cold Spring Harbor Labs 2008-04-07 [HT Sequencing] Illumina Genome Analyzer (Flock house virus) (GPL9402) SRA Drosophila melanogaster,Flock house virus
Drosophila melanogaster,Flock house virus		 unclassified source_name:small RNA title:S2cell (AGO1IP), Flock house virus description:small RNA from immunoprecipitate
17 GSM1004253 75% Human / 25% Mouse Replicate 1A 0 University of Miami 2012-09-14 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens; Mus musculus) (GPL16061) SRA Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 pooled human breast & mouse normal lung tissue
18 GSM1004254 75% Human / 25% Mouse Replicate 1B 0 University of Miami 2012-09-14 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens; Mus musculus) (GPL16061) SRA Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 pooled human breast & mouse normal lung tissue
19 GSM1004255 75% Human / 25% Mouse Replicate 2 0 University of Miami 2012-09-14 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens; Mus musculus) (GPL16061) SRA Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 pooled human breast & mouse normal lung tissue
20 GSM1004256 75% Human / 25% Mouse Replicate 3 0 University of Miami 2012-09-14 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens; Mus musculus) (GPL16061) SRA Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 pooled human breast & mouse normal lung tissue
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