Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(24,084)
  Primates
(96)
  Rodents
(5,968)
  Mammals
(882)
  Vertebrates
(512)
  Invertebrates
(2,100)
  Plants
(2,826)
  Bacteria
(1,279)
  Viruses
(0)
  Phages
(0)
  Unclassified
(135)
  All
(37,974)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(16)
  Oligo Array
(101)
  Bead Array
(1)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(17)
  Other
(0)
  All
(135)
 
  brain
(0)
  blood
(8)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(36)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(91)
  all
(135)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM578002 F1 hybrid replicate 1 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:F1 hybrid replicate 1
2 GSM578003 F1 hybrid replicate 2 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:F1 hybrid replicate 2
3 GSM578004 F2 hybrid replicate 1 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:F2 hybrid replicate 1
4 GSM578005 F2 hybrid replicate 2 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:F2 hybrid replicate 2
5 GSM578006 F2 hybrid replicate 3 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:F2 hybrid replicate 3
6 GSM578007 Introgression line IL1-1 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:Introgression line IL1-1
7 GSM578008 Introgression line IL2-5 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:Introgression line IL2-5
8 GSM578009 Introgression line IL8-1-1 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:Introgression line IL8-1-1
9 GSM578010 Introgression line IL8-1D 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:Introgression line IL8-1D
10 GSM578011 Introgression line IL8-1-3 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:Introgression line IL8-1-3
11 GSM578012 Introgression line IL8-2 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:Introgression line IL8-2
12 GSM578013 Introgression line IL8-2-1 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:Introgression line IL8-2-1
13 GSM578014 Introgression line IL8-3 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:Introgression line IL8-3
14 GSM578015 Introgression line IL8-3-1 0 University of Cambridge 2010-08-11 [HT Sequencing] Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) (GPL10777) SRA Solanum lycopersicum,unidentified
Solanum lycopersicum,unidentified
unclassified source_name:young seedlings aerial tissue title:Introgression line IL8-3-1
15 GSM585199 Yeast-Ecoli control, Mnase 0 Rutgers University 2010-08-19 [HT Sequencing] Illumina Genome Analyzer (Escherichia coli; Saccharomyces cerevisiae) (GPL10839) SRA Escherichia coli,Saccharomyces cerevisiae
Escherichia coli,Saccharomyces cerevisiae
unclassified source_name:Yeast-Ecoli mixture title:Yeast-Ecoli control, Mnase
16 GSM586903 Crop_42hrs_run1 0 University of Connectiuct 2010-08-24 [HT Sequencing] Illumina Genome Analyzer (gut metagenome; Hirudo verbana) (GPL10862) SRA Hirudo verbana,gut metagenome
Hirudo verbana,gut metagenome
unclassified source_name:Leech crop intraluminal fluid title:Crop_42hrs_run1 description:n/a
17 GSM586904 Crop_42hrs_run2 0 University of Connectiuct 2010-08-24 [HT Sequencing] Illumina Genome Analyzer (gut metagenome; Hirudo verbana) (GPL10862) SRA Hirudo verbana,gut metagenome
Hirudo verbana,gut metagenome
unclassified source_name:Leech crop intraluminal fluid title:Crop_42hrs_run2 description:n/a
18 GSM568780 Dual species array test for mouse RNA_Channel-1 87,107 University of Chicago 2010-07-21 [Oligo Array] [Agilent-021439] University of Chicago-Dual Species (Homo sapiens and Mus musculus) 87K array (GPL10714) RNA Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
unclassified source_name:1.5µg mouse total RNA title:Dual species array test for mouse RNA_Channel-1
19 GSM568781 Dual species array test for mouse RNA_Channel-2 87,107 University of Chicago 2010-07-21 [Oligo Array] [Agilent-021439] University of Chicago-Dual Species (Homo sapiens and Mus musculus) 87K array (GPL10714) RNA Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
unclassified source_name:0.75µg human RNA and 0.75µg mouse RNA title:Dual species array test for mouse RNA_Channel-2
20 GSM572567 Lung_control_baseline_rep1 44,290 Genentech, Inc. 2010-07-29 [Oligo Array] Agilent-012391 Whole Human Genome Oligo Microarray G4112A (Feature Number version) (GPL1708) RNA Macaca mulatta,Homo sapiens
Macaca mulatta,Homo sapiens
lung rhesus lung biopsy Stratagene Universal Human Reference
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