Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(28,971)
  Primates
(89)
  Rodents
(7,954)
  Mammals
(744)
  Vertebrates
(774)
  Invertebrates
(2,181)
  Plants
(2,767)
  Bacteria
(1,374)
  Viruses
(236)
  Phages
(0)
  Unclassified
(665)
  All
(45,839)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(63)
  Tiling Array
(0)
  cDNA Array
(28)
  Oligo Array
(83)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(491)
  Other
(0)
  All
(665)
 
  brain
(1)
  blood
(28)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(490)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(146)
  all
(665)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM656923 D3_10_m1 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run235.4_lane7 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
2 GSM656924 D3_10_m2 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run235.4_lane8 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
3 GSM656925 D3_10_m3 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run236.1_lane1 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
4 GSM656926 D3_10_m4 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run236.1_lane2 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
5 GSM656927 D3_10_m5 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run298_lane7 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
6 GSM656928 D3_10_m6 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run236.1_lane3 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
7 GSM656929 D3_10_m7 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run236.1_lane4 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
8 GSM656930 D3_10_m8 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run298_lane8 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
9 GSM656931 D3_10_m9 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run299_lane1 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
10 GSM656932 D3_10_m10 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run299_lane2 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
11 GSM656933 D3_10_m11 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run319.1_lane6 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
12 GSM656934 D3_10_m12 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run319.1_lane7 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
13 GSM656935 D3_10_m13 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run319.1_lane8 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
14 GSM656936 D4_10_m1 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run236.1_lane5 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
15 GSM656937 D4_10_m2 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run236.1_lane6 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
16 GSM656938 D4_10_m3 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run216_lane1 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
17 GSM656939 D4_10_m4 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run216_lane2 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
18 GSM656940 D4_10_m5 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run299_lane3 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
19 GSM656941 D4_10_m6 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run216_lane3 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
20 GSM656942 D4_10_m7 0 Washington University in St. Louis 2011-01-18 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA unidentified
unidentified
colon run216_lane4 rRNA depleted total RNA The following Organisms are included in these Samples: Eubacterium rectale ATCC 33656, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Blautia hydrogenotrophica DSM 10507, Bryantella formatexigens DSM 14469, Escherichia coli str. K-12 substr. MG1655, Desulfovibrio piger GOR1
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