Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(532)		   Tiling Array
(47)		   cDNA Array
(1,208)		   Oligo Array
(2,269)		   Bead Array
(576)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(771)		   Other
(82)		   All
(5,497)		  
  brain
(165)		   blood
(420)		   connective
(225)		   reproductive
(11)		   muscular
(94)		   digestive
(543)		   liver
(178)		   lung
(69)		   urinary
(40)		   endo/exo-crine
(85)		   embryo
(20)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(6)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(6)		   pooled
(363)		   unclassified
(3,272)		   all
(5,497)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM850143 YFV-132 43,414 Washington University in St. Louis, School of Medicine 2011-12-16 [cDNA Array] Recombination Detection Microarray Release I (R1.1Tiled) (GPL15022) RNA Chlorocebus,unidentified
Chlorocebus,unidentified		 unclassified source_name:infected culture title:YFV-132 description:hybridization of infected culture for use in training VIPR HMM
2 GSM850142 YFV-131 43,414 Washington University in St. Louis, School of Medicine 2011-12-16 [cDNA Array] Recombination Detection Microarray Release I (R1.1Tiled) (GPL15022) RNA Chlorocebus,unidentified
Chlorocebus,unidentified		 unclassified source_name:infected culture title:YFV-131 description:hybridization of infected culture for use in training VIPR HMM
3 GSM850137 YFV-126 43,414 Washington University in St. Louis, School of Medicine 2011-12-16 [cDNA Array] Recombination Detection Microarray Release I (R1.1Tiled) (GPL15022) RNA Chlorocebus,unidentified
Chlorocebus,unidentified		 unclassified source_name:infected culture title:YFV-126 description:hybridization of infected culture for use in training VIPR HMM
4 GSM850136 YFV-125 43,414 Washington University in St. Louis, School of Medicine 2011-12-16 [cDNA Array] Recombination Detection Microarray Release I (R1.1Tiled) (GPL15022) RNA Chlorocebus,unidentified
Chlorocebus,unidentified		 unclassified source_name:infected culture title:YFV-125 description:hybridization of infected culture for use in training VIPR HMM
5 GSM850122 YFV-106 43,414 Washington University in St. Louis, School of Medicine 2011-12-16 [cDNA Array] Recombination Detection Microarray Release I (R1.1Tiled) (GPL15022) RNA Chlorocebus,unidentified
Chlorocebus,unidentified		 unclassified source_name:infected culture title:YFV-106 description:hybridization of infected culture for use in validating VIPR HMM
6 GSM585199 Yeast-Ecoli control, Mnase 0 Rutgers University 2010-08-19 [HT Sequencing] Illumina Genome Analyzer (Escherichia coli; Saccharomyces cerevisiae) (GPL10839) SRA Escherichia coli,Saccharomyces cerevisiae
Escherichia coli,Saccharomyces cerevisiae		 unclassified source_name:Yeast-Ecoli mixture title:Yeast-Ecoli control, Mnase
7 GSM379241 Yeast-E. coli control, sonicated 0 Stanford University 2009-03-11 [HT Sequencing] Illumina Genome Analyzer (Escherichia coli; Saccharomyces cerevisiae) (GPL10839) SRA Escherichia coli,Saccharomyces cerevisiae
Escherichia coli,Saccharomyces cerevisiae		 unclassified source_name:yeast and E. coli title:Yeast-E. coli control, sonicated description:n/a
8 GSM243600 Xoo_52C_LowPMT_Rep2 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_52C_LowPMT_Rep2 description:Technical replicate 2 of 2
9 GSM243599 Xoo_52C_LowPMT_Rep1 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_52C_LowPMT_Rep1 description:Technical replicate 1 of 2
10 GSM243592 Xoo_52C_HighPMT_Rep2 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_52C_HighPMT_Rep2 description:Technical replicate 2 of 2
11 GSM243591 Xoo_52C_HighPMT_Rep1 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_52C_HighPMT_Rep1 description:Technical replicate 1 of 2
12 GSM243620 Xoo_50pMol_LowPMT_Rep2 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_50pMol_LowPMT_Rep2 description:Technical replicate 2 of 2
13 GSM243619 Xoo_50pMol_LowPMT_Rep1 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_50pMol_LowPMT_Rep1 description:Technical replicate 1 of 2
14 GSM243610 Xoo_50pMol_HighPMT_Rep2 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_50pMol_HighPMT_Rep2 description:Technical replicate 2 of 2
15 GSM243609 Xoo_50pMol_HighPMT_Rep1 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_50pMol_HighPMT_Rep1 description:Technical replicate 1 of 2
16 GSM243598 Xoo_48C_LowPMT_Rep2 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_48C_LowPMT_Rep2 description:Technical replicate 2 of 2
17 GSM243597 Xoo_48C_LowPMT_Rep1 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_48C_LowPMT_Rep1 description:Technical replicate 1 of 2
18 GSM243590 Xoo_48C_HighPMT_Rep2 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_48C_HighPMT_Rep2 description:Technical replicate 2 of 2
19 GSM243589 Xoo_48C_HighPMT_Rep1 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_48C_HighPMT_Rep1 description:Technical replicate 1 of 2
20 GSM243596 Xoo_44C_LowPMT_Rep2 10,080 University of California, Davis 2007-11-19 [Oligo Array] UCD_Ronald_XOarray_5K_V1.0 (GPL6123) RNA unidentified
unidentified		 unclassified source_name:Total RNA from Xoo phoP knockout mutant cultured in PSB labeled with Cyanine-5 Total RNA from Xoo rpfC knockout mutant cultured in PSB labeled with Cyanine-3 title:Xoo_44C_LowPMT_Rep2 description:Technical replicate 2 of 2
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