Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Unclassified
(5,242)

All
(898,944)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Tiling Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(0)

Other
(0)

All
(5,242)

brain
(165)

blood
(420)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(0)

embryo
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(0)

unclassified
(3,021)

all
(5,242)

	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM1026844	wild type PyYMWT	0	Seattle BioMed	2012-10-26	[HT Sequencing] Illumina Genome Analyzer (Plasmodium yoelii yoelii 17XNL) (GPL16222)	SRA	Plasmodium yoelii,unidentified	salivary	mosquito salivary glands
2	GSM1026845	PyPuf2KO	0	Seattle BioMed	2012-10-26	[HT Sequencing] Illumina Genome Analyzer (Plasmodium yoelii yoelii 17XNL) (GPL16222)	SRA	Plasmodium yoelii,unidentified	salivary	mosquito salivary glands
3	GSM786172	in vitro culture NM1200_InVitro_3_T2t2	0	Washington University	2011-08-25	[HT Sequencing] Illumina Genome Analyzer IIx (Bifidobacterium animalis subsp. lactis CNCM I-2494; Lactobacillus delbrueckii subsp. bulgaricus; Lactococcus lactis subsp. cremoris CNCM I-1631; Streptococcus thermophilus CNCM I-1630) (GPL14350)	SRA	unidentified	breast	Bifidobacterium animalis subsp. lactis CNCM I-2494,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519,Lactococcus lactis subsp. cremoris CNCM I-1631,Streptococcus thermophilus CNCM I-1630 rRNA-depleted total RNA RNA isolated from a fermented milk product (Danone, Activia) at the end of product fermentation (3 hours after initial inoculation of the milk), prior to cooling and packaging. B. animalis subsp. lactis represents approximately 9% of the total CFUs in these samples. Biological replicate #1 of 3.
4	GSM786173	in vitro culture NM1200_InVitro_3_T3t2	0	Washington University	2011-08-25	[HT Sequencing] Illumina Genome Analyzer IIx (Bifidobacterium animalis subsp. lactis CNCM I-2494; Lactobacillus delbrueckii subsp. bulgaricus; Lactococcus lactis subsp. cremoris CNCM I-1631; Streptococcus thermophilus CNCM I-1630) (GPL14350)	SRA	unidentified	breast	Bifidobacterium animalis subsp. lactis CNCM I-2494,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519,Lactococcus lactis subsp. cremoris CNCM I-1631,Streptococcus thermophilus CNCM I-1631 rRNA-depleted total RNA RNA isolated from a fermented milk product (Danone, Activia) at the end of product fermentation (3 hours after initial inoculation of the milk), prior to cooling and packaging. B. animalis subsp. lactis represents approximately 9% of the total CFUs in these samples. Biological replicate #2 of 3.
5	GSM786174	in vitro culture NM1200_InVitro_4_T4t2	0	Washington University	2011-08-25	[HT Sequencing] Illumina Genome Analyzer IIx (Bifidobacterium animalis subsp. lactis CNCM I-2494; Lactobacillus delbrueckii subsp. bulgaricus; Lactococcus lactis subsp. cremoris CNCM I-1631; Streptococcus thermophilus CNCM I-1630) (GPL14350)	SRA	unidentified	breast	Bifidobacterium animalis subsp. lactis CNCM I-2494,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519,Lactococcus lactis subsp. cremoris CNCM I-1631,Streptococcus thermophilus CNCM I-1632 rRNA-depleted total RNA RNA isolated from a fermented milk product (Danone, Activia) at the end of product fermentation (3 hours after initial inoculation of the milk), prior to cooling and packaging. B. animalis subsp. lactis represents approximately 9% of the total CFUs in these samples. Biological replicate #3 of 3.
6	GSM786175	in vitro culture NM1200_InVitro_4_E2t2	0	Washington University	2011-08-25	[HT Sequencing] Illumina Genome Analyzer IIx (Bifidobacterium animalis subsp. lactis CNCM I-2494; Lactobacillus delbrueckii subsp. bulgaricus; Lactococcus lactis subsp. cremoris CNCM I-1631; Streptococcus thermophilus CNCM I-1630) (GPL14350)	SRA	unidentified	breast	Bifidobacterium animalis subsp. lactis CNCM I-2494,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519,Lactococcus lactis subsp. cremoris CNCM I-1631,Streptococcus thermophilus CNCM I-1633 rRNA-depleted total RNA RNA isolated from a milk fermentation reaction 3 hours after inoculation of the milk. The milk in these reactions included a B. animalis subsp. lactis growth-enhancing ingredient. B. animalis subsp. lactis represents approximately 44% of the total CFUs in these samples. Biological replicate #1 of 3.
7	GSM786176	in vitro culture NM1200_InVitro_5_E3t2	0	Washington University	2011-08-25	[HT Sequencing] Illumina Genome Analyzer IIx (Bifidobacterium animalis subsp. lactis CNCM I-2494; Lactobacillus delbrueckii subsp. bulgaricus; Lactococcus lactis subsp. cremoris CNCM I-1631; Streptococcus thermophilus CNCM I-1630) (GPL14350)	SRA	unidentified	breast	Bifidobacterium animalis subsp. lactis CNCM I-2494,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519,Lactococcus lactis subsp. cremoris CNCM I-1631,Streptococcus thermophilus CNCM I-1634 rRNA-depleted total RNA RNA isolated from a milk fermentation reaction 3 hours after inoculation of the milk. The milk in these reactions included a B. animalis subsp. lactis growth-enhancing ingredient. B. animalis subsp. lactis represents approximately 44% of the total CFUs in these samples. Biological replicate #2 of 3.
8	GSM786177	in vitro culture NM1200_InVitro_5_E4t2	0	Washington University	2011-08-25	[HT Sequencing] Illumina Genome Analyzer IIx (Bifidobacterium animalis subsp. lactis CNCM I-2494; Lactobacillus delbrueckii subsp. bulgaricus; Lactococcus lactis subsp. cremoris CNCM I-1631; Streptococcus thermophilus CNCM I-1630) (GPL14350)	SRA	unidentified	breast	Bifidobacterium animalis subsp. lactis CNCM I-2494,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519,Lactococcus lactis subsp. cremoris CNCM I-1631,Streptococcus thermophilus CNCM I-1635 rRNA-depleted total RNA RNA isolated from a milk fermentation reaction 3 hours after inoculation of the milk. The milk in these reactions included a B. animalis subsp. lactis growth-enhancing ingredient. B. animalis subsp. lactis represents approximately 44% of the total CFUs in these samples. Biological replicate #3 of 3.
9	GSM714652	WU-BC4, mouse passage1	41,000	Washington University Medical School	2011-04-26	[Oligo Array] Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version) (GPL6480)	RNA	Homo sapiens,Mus musculus	breast	Stratagene Human Universal Reference spiked with MCF7 and ME16C mRNA primary breast tumor, WU-BC4, xenograft passage1
10	GSM714653	WU-BC4, mouse passage3	41,000	Washington University Medical School	2011-04-26	[Oligo Array] Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version) (GPL6480)	RNA	Homo sapiens,Mus musculus	breast	Stratagene Human Universal Reference spiked with MCF7 and ME16C mRNA primary breast tumor, WU-BC4, xenograft passage3
11	GSM714654	WU-BC4, mouse passage4	41,000	Washington University Medical School	2011-04-26	[Oligo Array] Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version) (GPL6480)	RNA	Homo sapiens,Mus musculus	breast	Stratagene Human Universal Reference spiked with MCF7 and ME16C mRNA primary breast tumor, WU-BC4, xenograft passage4
12	GSM714655	WU-BC4, mouse passage5	41,000	Washington University Medical School	2011-04-26	[Oligo Array] Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version) (GPL6480)	RNA	Homo sapiens,Mus musculus	breast	Stratagene Human Universal Reference spiked with MCF7 and ME16C mRNA primary breast tumor, WU-BC4, xenograft passage5
13	GSM539046	Mono cultures 5.5 h rep1 _ Mono cultures 3.5 h rep1	8,941	NIZO Food Research	2010-04-29	[Oligo Array] WCFS yoghurt arrays, TB1_8, Version 1 (GPL10366)	RNA	unidentified	breast	Mono cultures in milk grown for 5.5 h rep1 compared to Mono cultures in milk grown for 3.5 h rep1
14	GSM539047	Mono cultures 8 h rep1 _ Mono cultures 5.5 h rep1	8,941	NIZO Food Research	2010-04-29	[Oligo Array] WCFS yoghurt arrays, TB1_8, Version 1 (GPL10366)	RNA	unidentified	breast	Mono cultures in milk grown for 8 h rep1 compared to Mono cultures in milk grown for 5.5 h rep1
15	GSM539048	Mono cultures 12 h rep1 _ Mono cultures 8 h rep1	8,941	NIZO Food Research	2010-04-29	[Oligo Array] WCFS yoghurt arrays, TB1_8, Version 1 (GPL10366)	RNA	unidentified	breast	Mono cultures in milk grown for 12 h rep1 compared to Mono cultures in milk grown for 8 h rep1
16	GSM539049	Mixed culture 3.5 h rep1 _ Mixed culture 5.5 h rep1	8,941	NIZO Food Research	2010-04-29	[Oligo Array] WCFS yoghurt arrays, TB1_8, Version 1 (GPL10366)	RNA	unidentified	breast	Mixed culture in milk grown for 3.5 h rep1 compared to Mixed culture in milk grown for 5.5 h rep1
17	GSM539050	Mixed culture 5.5 h rep1 _ Mixed culture 8 h rep1	8,941	NIZO Food Research	2010-04-29	[Oligo Array] WCFS yoghurt arrays, TB1_8, Version 1 (GPL10366)	RNA	unidentified	breast	Mixed culture in milk grown for 5.5 h rep1 compared to Mixed culture in milk grown for 8 h rep1
18	GSM539051	Mixed culture 8 h rep1 _ Mixed culture 12 h rep1	8,941	NIZO Food Research	2010-04-29	[Oligo Array] WCFS yoghurt arrays, TB1_8, Version 1 (GPL10366)	RNA	unidentified	breast	Mixed culture in milk grown for 8 h rep1 compared to Mixed culture in milk grown for 12 h rep1
19	GSM539052	Mono cultures 3.5 h rep2 _ Mono cultures 5.5 h rep2	8,941	NIZO Food Research	2010-04-29	[Oligo Array] WCFS yoghurt arrays, TB1_8, Version 1 (GPL10366)	RNA	unidentified	breast	Mono cultures in milk grown for 3.5 h rep2 compared to Mono cultures in milk grown for 5.5 h rep2
20	GSM539053	Mono cultures 5.5 h rep2 _ Mono cultures 8 h rep2	8,941	NIZO Food Research	2010-04-29	[Oligo Array] WCFS yoghurt arrays, TB1_8, Version 1 (GPL10366)	RNA	unidentified	breast	Mono cultures in milk grown for 5.5 h rep2 compared to Mono cultures in milk grown for 8 h rep2