Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(11)		   Tiling Array
(4)		   cDNA Array
(35)		   Oligo Array
(221)		   Bead Array
(2)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(4)		   HT-Seq
(91)		   Other
(29)		   All
(399)		  
1   |   2      »      
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10021 NRC-BRI biofilms 10K v1.0 20,160 NRC-BRI 2010-02-09 NRC-BRI, Environmental Microbiology
cDNA Array spotted DNA/cDNA, NRC-BRI biofilms 10K v1.0,
2 GPL2889 Acyrthosiphon pisum + Buchnera aphidicola dual genome array 1,904 University of Arizona 2005-09-26 GATC - University of Arizona Buchnera aphidicola,Acyrthosiphon pisum
Buchnera aphidicola,Acyrthosiphon pisum		 cDNA Array spotted DNA/cDNA, Acyrthosiphon pisum + Buchnera aphidicola dual genome array, Dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola The platform table is condensed to show each GENE on the array. The full array table, showing all spots, is linked as a supplementary file (see download link below).
3 GPL5347 Arizona Aphid/Buchnera 1 7,680 Princeton University 2007-06-01 GATC - University of Arizona Buchnera aphidicola,Escherichia coli,Acyrthosiphon pisum
Buchnera aphidicola,Escherichia coli,Acyrthosiphon pisum		 cDNA Array spotted DNA/cDNA, Arizona Aphid/Buchnera 1, Dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola.
4 GPL10668 Laval/Sirard_human-bovine_granulosa_2.5K_V1.0 4,368 Laval University 2010-07-09 Marc-André Sirard' laboratory, Laval University. Homo sapiens,Bos taurus
Homo sapiens,Bos taurus		 cDNA Array spotted DNA/cDNA, Laval/Sirard_human-bovine_granulosa_2.5K_V1.0,
5 GPL5849 Host and Pathogen Microarray 771 UCL 2007-09-13 Custom spotted at UCL Homo sapiens,Human herpesvirus 8
Homo sapiens,Human herpesvirus 8		 cDNA Array spotted DNA/cDNA, Host and Pathogen Microarray,
6 GPL6762 Print_1046 42,624 Whitehead Institute for Biomedical Research 2008-04-22 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens,Monkeypox virus,Vaccinia virus,Variola virus
Homo sapiens,Monkeypox virus,Vaccinia virus,Variola virus		 cDNA Array spotted DNA/cDNA, Print_1046,
7 GPL6764 Print_1256 42,624 Whitehead Institute for Biomedical Research 2008-04-22 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens,Monkeypox virus,Vaccinia virus,Variola virus
Homo sapiens,Monkeypox virus,Vaccinia virus,Variola virus		 cDNA Array spotted DNA/cDNA, Print_1256,
8 GPL6763 Print_1110 41,088 Whitehead Institute for Biomedical Research 2008-04-22 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens,Monkeypox virus,Vaccinia virus,Variola virus
Homo sapiens,Monkeypox virus,Vaccinia virus,Variola virus		 cDNA Array spotted DNA/cDNA, Print_1110,
9 GPL980 15 K cDNA 17,280 U.T. Southwestern Medical Center 2004-02-10 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 cDNA Array spotted DNA/cDNA, 15 K cDNA, Mouse and human 15,000 gene cDNA array
10 GPL4391 salivary gland secretion 240 University of Rochester Medical Center 2006-10-05 University of Rochester Medical Center, Rochester, NY Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 cDNA Array spotted DNA/cDNA, salivary gland secretion, UltraGap Gamma Amino Propyl Silane slides (Corning, NY)
11 GPL10178 Miltenyi Biotec miRXplore miRNA Microarray (717) 6,912 University of Louisville 2010-03-15 Miltenyi Biotec GmbH Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 cDNA Array spotted DNA/cDNA, Miltenyi Biotec miRXplore miRNA Microarray (717), Mus musculus (ICR). Each spot occurs in quadruplicate. Supplementary file 717.HQR contains the metadata describing each spot position on the chip.
12 GPL10179 Miltenyi Biotec miRXplore miRNA Microarray (653) 6,336 University of Louisville 2010-03-15 Miltenyi Biotec GmbH Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 cDNA Array spotted DNA/cDNA, Miltenyi Biotec miRXplore miRNA Microarray (653), Mus musculus (ICR). Each spot occurs in quadruplicate. Supplementary file 653.HQR contains the metadata describing each spot position on the chip.
13 GPL15235 miRXplore TM Microarray (958) 1,607 Miltenyi Biotec GmbH 2012-02-15 Miltenyi Biotec GmbH, Cologne, Germany Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 cDNA Array spotted DNA/cDNA, miRXplore TM Microarray (958), The miRXplore TM Microarray is composed of 6428 DNA oligonucleotides with a sequence being reverse complement to the respective mature miRNA or control RNA, representing a total of 1510 miRNA sequences and 97 controls with all probes spotted in quadruplicates. The 1510 miRNA sequences covered sequence verified miRNAs of the species human (898) mouse (742) and rat (505) as well as viral miRNAs (148) as deposited in the miRBase sequence database version 17.0. The 97 positive and negative control probes were chosen as follows. Three sets of controls, miRControl 1 (four sequences used to assess efficiency and sensitivity of labelling), miRControl 2 (single sequence used to assess efficiency of small RNA enrichment) and miRControl 3 (43 sequences used to normalize signal intensities across different samples and arrays) were artificial sequences chosen not be present in any of the human, mouse, rat or viral genome. A fourth set of positive controls presented 36 positive small but non-miRNA sequences including probes e.g. for 5.1 sRNA, tRNAs, and U6 RNAs. A fifth set of oligonucleotides included 13 negative controls like different single or double mismatch, antisense, or scrambled miRNA sequences. Microarrays were manufactured by Miltenyi Biotec. Briefly, 1.2 nl of 10 µM HPLC purified, 5’ amino-modified DNA oligonucleotides (Metabion) were spotted on aminopropyltrimethoxysilane / phenylendiisothiocyanate coated glass slides in quadruplicates using a customized piezoelectric spotter.
14 GPL15234 miRXplore TM Microarray (911) 1,557 Miltenyi Biotec GmbH 2012-02-15 Miltenyi Biotec GmbH, Cologne, Germany Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 cDNA Array spotted DNA/cDNA, miRXplore TM Microarray (911), The miRXplore TM Microarray is composed of 6228 DNA oligonucleotides with a sequence being reverse complement to the respective mature miRNA or control RNA, representing a total of 1460 miRNA sequences and 97 controls with all probes spotted in quadruplicates. The 1460 miRNA sequences covered sequence verified miRNAs of the species human (878) mouse (682) and rat (427) as well as viral miRNAs (141) as deposited in the miRBase sequence database version 14.0. The 97 positive and negative control probes were chosen as follows. Three sets of controls, miRControl 1 (four sequences used to assess efficiency and sensitivity of labelling), miRControl 2 (single sequence used to assess efficiency of small RNA enrichment) and miRControl 3 (43 sequences used to normalize signal intensities across different samples and arrays) were artificial sequences chosen not be present in any of the human, mouse, rat or viral genome. A fourth set of positive controls presented 36 positive small but non-miRNA sequences including probes e.g. for 5.1 sRNA, tRNAs, and U6 RNAs. A fifth set of oligonucleotides included 13 negative controls like different single or double mismatch, antisense, or scrambled miRNA sequences. Microarrays were manufactured by Miltenyi Biotec. Briefly, 1.2 nl of 10 µM HPLC purified, 5’ amino-modified DNA oligonucleotides (Metabion) were spotted on aminopropyltrimethoxysilane / phenylendiisothiocyanate coated glass slides in quadruplicates using a customized piezoelectric spotter.
15 GPL13481 miRXplore TM Microarray (867) 1,471 Miltenyi Biotec GmbH 2011-05-03 Miltenyi Biotec GmbH, Cologne, Germany Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 cDNA Array spotted DNA/cDNA, miRXplore TM Microarray (867), The miRXplore TM Microarray is composed of 5892 DNA oligonucleotides with a sequence being reverse complement to the respective mature miRNA or control RNA, representing a total of 1374 miRNA sequences and 97 controls with all probes spotted in quadruplicates. The 1374 miRNA sequences covered sequence verified miRNAs of the species human (859) mouse (622) and rat (428) as well as viral miRNAs (129) as deposited in the miRBase sequence database version 12.0. The 97 positive and negative control probes were chosen as follows. Three sets of controls, miRControl 1 (four sequences used to assess efficiency and sensitivity of labelling), miRControl 2 (single sequence used to assess efficiency of small RNA enrichment) and miRControl 3 (43 sequences used to normalize signal intensities across different samples and arrays) were artificial sequences chosen not be present in any of the human, mouse, rat or viral genome. A fourth set of positive controls presented 36 positive small but non-miRNA sequences including probes e.g. for 5.1 sRNA, tRNAs, and U6 RNAs. A fifth set of oligonucleotides included 13 negative controls like different single or double mismatch, antisense, or scrambled miRNA sequences. Microarrays were manufactured by Miltenyi Biotec. Briefly, 1.2 nl of 10 µM HPLC purified, 5’ amino-modified DNA oligonucleotides (Metabion) were spotted on aminopropyltrimethoxysilane / phenylendiisothiocyanate coated glass slides in quadruplicates using a customized piezoelectric spotter.
16 GPL8436 miRXploreTM microarrays (865) 1,471 Miltenyi Biotec GmbH 2009-04-14 Miltenyi Biotec GmbH, Cologne, Germany Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 cDNA Array spotted DNA/cDNA, miRXploreTM microarrays (865), Each microarray contained a total of 5504 DNA oligonucleotides with a sequence being reverse complement to the respective mature miRNA or control RNA, representing a total of 2036 miRNA sequences and 97 controls with all probes spotted in quadruplicates. The 2036 miRNAs sequences covered sequence verified miRNAs of the species human (872) mouse (634) and rat (427) as well as viral miRNAs (130) as deposited in miRBase version 12.0. The 97 positive and negative control probes were chosen as follows. Three sets of controls, miRControl 1 (four sequences used to assess efficiency and sensitivity of labelling), miRControl 2 (single sequence used to assess efficiency of small RNA enrichment) and miRControl 3 (43 sequences used to normalize signal intensities across different samples and arrays) were artificial sequences chosen not be present in any of the human, mouse, rat or viral genome. A fourth set of positive controls presented 36 internal positive small but non-miRNA sequences including probes e.g. for 5.1 sRNA, tRNAs, and U6 RNAs. A fifth set of oligonucleotides included 13 negative controls like different single or double mismatch, antisense, or scrambled miRNA sequences. Microarrays were manufactured by Miltenyi Biotec. Briefly, 1.2 nl of 10 µM HPLC purified, 5’ amino-modified DNA oligonucleotides (Metabion) were spotted four times on aminopropyltrimethoxysilane / phenylendiisothiocyanate coated glass slides using a customized piezoelectric spotter.
17 GPL8441 miRXploreTM microarrays (872) 1,471 Miltenyi Biotec GmbH 2009-04-14 Miltenyi Biotec GmbH, Cologne, Germany Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 cDNA Array spotted DNA/cDNA, miRXploreTM microarrays (872), Each microarray contained a total of 5504 DNA oligonucleotides with a sequence being reverse complement to the respective mature miRNA or control RNA, representing a total of 2063 miRNA sequences and 97 controls with all probes spotted in quadruplicates. The 2063 miRNA sequences covered sequence verified miRNAs of the species human (871) mouse (634) and rat (426) as well as viral miRNAs (132) as deposited in the miRBase sequence database version 12.0. The 97 positive and negative control probes were chosen as follows. Three sets of controls, miRControl 1 (four sequences used to assess efficiency and sensitivity of labelling), miRControl 2 (single sequence used to assess efficiency of small RNA enrichment) and miRControl 3 (43 sequences used to normalize signal intensities across different samples and arrays) were artificial sequences chosen not be present in any of the human, mouse, rat or viral genome. A fourth set of positive controls presented 36 positive small but non-miRNA sequences including probes e.g. for 5.1 sRNA, tRNAs, and U6 RNAs. A fifth set of oligonucleotides included 13 negative controls like different single or double mismatch, antisense, or scrambled miRNA sequences. Microarrays were manufactured by Miltenyi Biotec. Briefly, 1.2 nl of 10 µM HPLC purified, 5’ amino-modified DNA oligonucleotides (Metabion) were spotted on aminopropyltrimethoxysilane / phenylendiisothiocyanate coated glass slides in quadruplicates using a customized piezoelectric spotter.
18 GPL8440 miRXploreTM microarrays (856) 1,422 Miltenyi Biotec GmbH 2009-04-14 Miltenyi Biotec GmbH, Cologne, Germany Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 cDNA Array spotted DNA/cDNA, miRXploreTM microarrays (856), Each microarray contained a total of 5308 DNA oligonucleotides with a sequence being reverse complement to the respective mature miRNA or control RNA, representing a total of 2012 miRNA sequences and 97 controls with all probes spotted in quadruplicates. The 2012 miRNA sequences covered sequence verified miRNAs of the species human (849) mouse (616) and rat (426) as well as viral miRNAs (121) as deposited in the miRBase sequence database version 11.0. The 97 positive and negative control probes were chosen as follows. Three sets of controls, miRControl 1 (four sequences used to assess efficiency and sensitivity of labelling), miRControl 2 (single sequence used to assess efficiency of small RNA enrichment) and miRControl 3 (43 sequences used to normalize signal intensities across different samples and arrays) were artificial sequences chosen not be present in any of the human, mouse, rat or viral genome. A fourth set of positive controls presented 36 positive small but non-miRNA sequences including probes e.g. for 5.1 sRNA, tRNAs, and U6 RNAs. A fifth set of oligonucleotides included 13 negative controls like different single or double mismatch, antisense, or scrambled miRNA sequences. Microarrays were manufactured by Miltenyi Biotec. Briefly, 1.2 nl of 10 µM HPLC purified, 5’ amino-modified DNA oligonucleotides (Metabion) were spotted on aminopropyltrimethoxysilane / phenylendiisothiocyanate coated glass slides in quadruplicates using a customized piezoelectric spotter. Each microarray contained a total of 5308 DNA oligonucleotides with a sequence being reverse complement to the respective mature miRNA or control RNA, representing a total of 2012 miRNA sequences and 97 controls with all probes spotted in quadruplicates. The 2012 miRNA sequences covered sequence verified miRNAs of the species human (849) mouse (616) and rat (426) as well as viral miRNAs (121) as deposited in the miRBase sequence database version 11.0. The 97 positive and negative control probes were chosen as follows. Three sets of controls, miRControl 1 (four sequences used to assess efficiency and sensitivity of labelling), miRControl 2 (single sequence used to assess efficiency of small RNA enrichment) and miRControl 3 (43 sequences used to normalize signal intensities across different samples and arrays) were artificial sequences chosen not be present in any of the human, mouse, rat or viral genome. A fourth set of positive controls presented 36 positive small but non-miRNA sequences including probes e.g. for 5.1 sRNA, tRNAs, and U6 RNAs. A fifth set of oligonucleotides included 13 negative controls like different single or double mismatch, antisense, or scrambled miRNA sequences. Microarrays were manufactured by Miltenyi Biotec. Briefly, 1.2 nl of 10 µM HPLC purified, 5’ amino-modified DNA oligonucleotides (Metabion) were spotted on aminopropyltrimethoxysilane / phenylendiisothiocyanate coated glass slides in quadruplicates using a customized piezoelectric spotter.
19 GPL16326 miRXplore TM Microarray (836) 1,417 Miltenyi Biotec GmbH 2012-11-27 Miltenyi Biotec GmbH, Cologne, Germany Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 cDNA Array spotted DNA/cDNA, miRXplore TM Microarray (836), The miRXplore TM Microarray is composed of 5668 DNA oligonucleotides with a sequence being reverse complement to the respective mature miRNA or control RNA, representing a total of 1320 miRNA sequences and 97 controls with all probes spotted in quadruplicates. The 1320 miRNA sequences covered sequence-verified miRNAs of the species human (735), mouse (587) and rat (429), as well as viral miRNAs (150) as deposited in the miRBase sequence database version 10.0. The 97 positive and negative control probes were chosen as follows. Three sets of controls, miRControl 1 (four sequences used to assess efficiency and sensitivity of labelling), miRControl 2 (single sequence used to assess efficiency of small RNA enrichment) and miRControl 3 (43 sequences used to normalize signal intensities across different samples and arrays) were artificial sequences chosen not to be present in any of the human, mouse, rat or viral genomes. A fourth set of positive controls presented 36 positive small but non-miRNA sequences including probes e.g., for 5.1 sRNA, tRNAs, and U6 RNAs. A fifth set of oligonucleotides included 13 negative controls like different single or double mismatch, antisense, or scrambled miRNA sequences. Microarrays were manufactured by Miltenyi Biotec. Briefly, 1.2 nl of 10 µM HPLC purified, 5’ amino-modified DNA oligonucleotides (Metabion) were spotted on aminopropyltrimethoxysilane- / phenylendiisothiocyanate-coated glass slides in quadruplicates using a customized piezoelectric spotter.
20 GPL8439 miRXploreTM microarrays (834) 1,417 Miltenyi Biotec GmbH 2009-04-14 Miltenyi Biotec GmbH, Cologne, Germany Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 cDNA Array spotted DNA/cDNA, miRXploreTM microarrays (834), Each microarray contained a total of 5288 DNA oligonucleotides with a sequence being reverse complement to the respective mature miRNA or control RNA, representing a total of 1977 miRNA sequences and 97 controls with all probes spotted in quadruplicates. The 1977 miRNA sequences covered sequence verified miRNAs of the species human (738) mouse (588) and rat (426) as well as viral miRNAs (150) and further mammalian species (75) as deposited in the miRBase sequence database version 10.1. The 97 positive and negative control probes were chosen as follows. Three sets of controls, miRControl 1 (four sequences used to assess efficiency and sensitivity of labelling), miRControl 2 (single sequence used to assess efficiency of small RNA enrichment) and miRControl 3 (43 sequences used to normalize signal intensities across different samples and arrays) were artificial sequences chosen not be present in any of the human, mouse, rat or viral genome. A fourth set of positive controls presented 36 positive small but non-miRNA sequences including probes e.g. for 5.1 sRNA, tRNAs, and U6 RNAs. A fifth set of oligonucleotides included 13 negative controls like different single or double mismatch, antisense, or scrambled miRNA sequences. Microarrays were manufactured by Miltenyi Biotec. Briefly, 1.2 nl of 10 µM HPLC purified, 5’ amino-modified DNA oligonucleotides (Metabion) were spotted on aminopropyltrimethoxysilane / phenylendiisothiocyanate coated glass slides in quadruplicates using a customized piezoelectric spotter.
1   |   2      »      
DBCLS | Site Policies | Contact Us