Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(9)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(10)		   Tiling Array
(10)		   cDNA Array
(77)		   Oligo Array
(224)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(67)		   Other
(1)		   All
(402)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL1319 [Zebrafish] Affymetrix Zebrafish Genome Array 15,617 Affymetrix, Inc. 2004-07-01 Affymetrix Danio rerio
Danio rerio		 GeneChip in situ oligonucleotide, [Zebrafish] Affymetrix Zebrafish Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The Affymetrix GeneChip Zebrafish Genome Array can be used to study gene expression of over 14,900 Danio rerio transcripts. Sequence information for this array was selected from the following public data sources: RefSeq (July 2003), GenBank (release 136.0, June 2003), dbEST (July 2003), and UniGene (Build 54, June 2003). Probe sets on the array were designed with 16 oligonucleotide pairs to detect each transcript. This array was designed in collaboration with representative members of the Zebrafish community and the National Institutes of Health. Note: The DsRed probe set is provided with permission from BD Biosciences, and BD Biosciences grants users a limited license to utilize this probe set only on the Affymetrix array. Other uses of the probe set, or other DsRed sequence or sequences requires a license from BD Biosciences. Annotations derived from Affymetrix CSV file dated 6/23/2004
2 GPL16933 [ZebGene-1_0-st] Zebrafish Gene 1.0 ST Array [transcript (gene) version] 75,212 Affymetrix Japan 2013-03-29 Affymetrix Danio rerio
Danio rerio		 GeneChip in situ oligonucleotide, [ZebGene-1_0-st] Zebrafish Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Jan 29, 2013: annotation table updated with netaffx build 33
3 GPL10263 [X_tropicalis] Affymetrix Xenopus tropicalis Genome Array 59,021 Affymetrix, Inc. 2010-03-29 Affymetrix Xenopus (Silurana) tropicalis
Xenopus tropicalis		 GeneChip in situ oligonucleotide, [X_tropicalis] Affymetrix Xenopus tropicalis Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This array was designed in close collaboration with the Xenopus research community as part of the Affymetrix® GeneChip Consortia Program. Sequences used in the design of the array were selected from the Xenopus tropicalis UniGene database (Build 30, July 2006), GenBank® mRNAs for Xenopus tropicalis (up to September 12, 2006), and predicted gene sets from both the DOE Joint Genome Institute (Xentr4 transcripts, file creation date August 17, 2005, download date May 25, 2006) and Ensembl (release 40, download date May 2006).
4 GPL10756 [X_laevis_2] Affymetrix Xenopus laevis Genome 2.0 Array 32,635 Affymetrix, Inc. 2010-08-03 Affymetrix Xenopus laevis
Xenopus laevis		 GeneChip in situ oligonucleotide, [X_laevis_2] Affymetrix Xenopus laevis Genome 2.0 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
5 GPL1318 [Xenopus_laevis] Affymetrix Xenopus laevis Genome Array 15,611 Affymetrix, Inc. 2004-06-30 Affymetrix Xenopus laevis
Xenopus laevis		 GeneChip in situ oligonucleotide, [Xenopus_laevis] Affymetrix Xenopus laevis Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The Affymetrix GeneChip Xenopus laevis Genome Array can be used to study gene expression of over 14,400 Xenopus laevis transcripts. Sequence information for this array was selected from the following public data sources: GenBank (release 135.0, April 2003), dbEST (June 2003), and UniGene (Build 36, June 2003). Probe sets on the array were designed with 16 oligonucleotide pairs to detect each transcript. This array was designed in collaboration with representative members of the Xenopus community and the National Institutes of Health. More information on the design of this array can be found at www.xenbase.org Note: The DsRed probe set is provided with permission from BD Biosciences, and BD Biosciences grants users a limited license to utilize this probe set only on the Affymetrix array. Other uses of the probe set, or other DsRed sequence or sequences requires a license from BD Biosciences.
6 GPL16788 [FinGene-1_0-st] Zebra Finch Gene 1.0 ST Array [transcript (gene) version] 28,296 Affymetrix Japan 2013-03-14 Affymetrix Taeniopygia guttata
Taeniopygia guttata		 GeneChip in situ oligonucleotide, [FinGene-1_0-st] Zebra Finch Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Thu Oct 20 14:39:28 PDT 2011 #%chip_type=FinGene-1_0-st-v1 #%lib_set_name=FinGene-1_0-st #%lib_set_version=v1 #%genome-species=Taeniopygia guttata #%genome-version=taeGut1 #%genome-version-create_date=2008-07-00 #%annotation-version=design-time
7 GPL3213 [Chicken] Affymetrix Chicken Genome Array 38,535 Affymetrix, Inc. 2005-11-30 Affymetrix Gallus gallus
Gallus gallus		 GeneChip in situ oligonucleotide, [Chicken] Affymetrix Chicken Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Sequence information for the GeneChip Chicken Genome Array can be used to study gene expression of 33,457 chicken and viral transcripts. Species covered include Gallus gallus (chicken) and 17 avian viruses. Sequence information for this array includes public content from GenBank®, UniGene (Build 18; 15 May 2004), and Ensembl (version 1, released May 2004). Probe sets on the array were designed with 11 oligonucleotide pairs to detect each transcript.
8 GPL11151 Rainbow trout 8k 8,074 Tim Cavileer 2010-11-01 Affymetrix Oncorhynchus mykiss
Oncorhynchus mykiss		 GeneChip in situ oligonucleotide, Rainbow trout 8k, 49 - NimbleExpress sense design
9 GPL10234 Affymetrix Chicken Genome Array [GgChicken_ENTREZG10] 12,495 Peking University 2010-03-22 Affymetrix Gallus gallus
Gallus gallus		 GeneChip in situ oligonucleotide, Affymetrix Chicken Genome Array [GgChicken_ENTREZG10],
10 GPL15153 Affymetrix Ambystoma mexicanum AMBY_002 20k array [CDF: AMBY_002a520748F] 20,080 University of Florida 2012-01-21 Affymetrix Ambystoma mexicanum
Ambystoma mexicanum		 GeneChip in situ oligonucleotide, Affymetrix Ambystoma mexicanum AMBY_002 20k array [CDF: AMBY_002a520748F], AMBY_002a520748F AMBY_002a520748F.cdf Seifert_AMBY_002a520748F_probe_tab.txt
DBCLS | Site Policies | Contact Us