Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(13)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(2)		   GeneChip
(2,708)		   Tiling Array
(76)		   cDNA Array
(6,040)		   Oligo Array
(8,729)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(46)		   HT-Seq
(626)		   Other
(5)		   All
(18,263)		  
  brain
(54)		   blood
(22)		   connective
(7)		   reproductive
(69)		   muscular
(30)		   digestive
(3)		   liver
(29)		   lung
(8)		   urinary
(15)		   endo/exo-crine
(0)		   embryo
(267)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(13)		   unclassified
(109)		   all
(626)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM727519 TDRD1IPlong 9,924,201 Hubrecht Institute 2011-05-20 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 testis RNA obtained from immunoprecipitation with Tdrd1 antibody from zebrafish testis extract
2 GSM727524 ZiliIPTes 7,748,487 Hubrecht Institute 2011-05-20 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 unclassified source_name:RNA obtained from immunoprecipitation with Zili antibody title:ZiliIPTes description:Small RNA sequence data (RIP-Seq)
3 GSM475282 Xenopus-egg_Y12-associated small RNAs 3,886,632 Memorial Sloan Kettering Cancer Center 2009-11-24 [HT Sequencing] Illumina Genome Analyzer II (Xenopus (Silurana) tropicalis) (GPL9320) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis		 ovary Xenopus-egg_Y12-associated small RNAs
4 GSM830244 hen1 mutant polyA 3,494,197 Hubrecht Institute 2011-11-09 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 testis testis
5 GSM830246 hen1 mutant ligation 3,041,843 Hubrecht Institute 2011-11-09 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 testis testis
6 GSM727520 TDRD1IPshort 2,761,702 Hubrecht Institute 2011-05-20 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 testis RNA obtained from immunoprecipitation with Tdrd1 antibody from zebrafish testis extract
7 GSM830247 wildtype ligation 2,541,184 Hubrecht Institute 2011-11-09 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 testis testis
8 GSM861785 kdrl:egfp-pos microRNA 2,435,707 Umass Medical School 2012-01-12 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio		 unclassified source_name:FACS-isolated kdrl:egfp-positive cells title:kdrl:egfp-pos microRNA description:GFPplus microRNA
9 GSM727522 WT3WK 1,935,663 Hubrecht Institute 2011-05-20 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 ovary 3 week old whole gonads
10 GSM727523 WTTESTIS 1,762,922 Hubrecht Institute 2011-05-20 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 testis adult testis extract
11 GSM744253 Gastrula_dorsal_explant 1,739,435 P. Universidad Catolica de Chile 2011-06-17 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus (Silurana) tropicalis) (GPL13741) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis		 embryo Embryo, dorsal
12 GSM861784 miRNA_GFP_minus 1,589,089 Umass Medical School 2012-01-12 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio		 embryo whole zebrafish embryos at 24 hpf
13 GSM861786 kdrl:egfp-min microRNA 1,497,971 Umass Medical School 2012-01-12 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio		 unclassified source_name:FACS-isolated egfp-negative cells title:kdrl:egfp-min microRNA description:GFPminus microRNA
14 GSM727525 ZiwiIPTes 1,494,922 Hubrecht Institute 2011-05-20 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 testis RNA obtained from immunoprecipitation with Ziwi antibody from zebrafish testis extract
15 GSM744254 Gastrula_ventral_explant 1,481,303 P. Universidad Catolica de Chile 2011-06-17 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus (Silurana) tropicalis) (GPL13741) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis		 embryo Embryo, ventral
16 GSM727521 TDRD1WK3 1,268,813 Hubrecht Institute 2011-05-20 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 ovary 3 week old tdrd1 mutant gonads
17 GSM371824 D.rerio_adult_pooled infected fish_1,2,3 and 4 (s7) 1,156,021 University of Leiden 2009-02-17 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 unclassified source_name:pooled whole adult fish (M.marinum-infected) title:D.rerio_adult_pooled infected fish_1,2,3 and 4 (s7) description:s_7
18 GSM830245 wildtype polyA 1,048,827 Hubrecht Institute 2011-11-09 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 testis testis
19 GSM371822 D.rerio_adult_pooled infected fish_1,2,3 and 4 (s3) 879,888 University of Leiden 2009-02-17 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 unclassified source_name:pooled whole adult fish (M.marinum-infected) title:D.rerio_adult_pooled infected fish_1,2,3 and 4 (s3) description:s_3
20 GSM371821 D.rerio_adult_pooled control fish 1,2,3 and 4 (s2) 803,866 University of Leiden 2009-02-17 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 unclassified source_name:pooled whole adult fish (healthy control) title:D.rerio_adult_pooled control fish 1,2,3 and 4 (s2) description:s_2
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