Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(13)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(2)
  GeneChip
(3,128)
  Tiling Array
(76)
  cDNA Array
(6,517)
  Oligo Array
(11,209)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(46)
  HT-Seq
(1,567)
  Other
(5)
  All
(22,581)
 
  brain
(75)
  blood
(27)
  connective
(54)
  reproductive
(100)
  muscular
(40)
  digestive
(3)
  liver
(202)
  lung
(8)
  urinary
(17)
  endo/exo-crine
(0)
  embryo
(467)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(51)
  unclassified
(523)
  all
(1,567)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM171830 Hubrecht/NIOB Ketting zebrafish ovary piRNAs 89,240 Hubrecht Institute 2007-02-26 [HT Sequencing] 454 GS (Danio rerio) (GPL11102) SRA Danio rerio
Danio rerio
ovary Hubrecht/NIOB Ketting zebrafish ovary piRNAs
2 GSM171831 Hubrecht/NIOB Ketting zebrafish testis piRNAs 89,240 Hubrecht Institute 2007-02-26 [HT Sequencing] 454 GS (Danio rerio) (GPL11102) SRA Danio rerio
Danio rerio
testis freshly dissected zebrafish testes
3 GSM270187 CE5 329,334 University of Queensland 2008-03-02 [HT Sequencing] Illumina Genome Analyzer (Gallus gallus) (GPL10223) SRA Gallus gallus
Gallus gallus
embryo 5 day embryo
4 GSM270188 CE7 220,166 University of Queensland 2008-03-02 [HT Sequencing] Illumina Genome Analyzer (Gallus gallus) (GPL10223) SRA Gallus gallus
Gallus gallus
embryo 7 day embryo
5 GSM270189 CE9 153,406 University of Queensland 2008-03-02 [HT Sequencing] Illumina Genome Analyzer (Gallus gallus) (GPL10223) SRA Gallus gallus
Gallus gallus
embryo 9 day embryo
6 GSM315424 small RNAs from wild-type zebrafish gonads 74,835 Hubrecht Institute 2008-08-26 [HT Sequencing] Hubrecht Institute Zebrafish Zili- and Ziwi-interacting small RNAs (454 GS FLX system) (GPL7207) RNA Danio rerio
Danio rerio
ovary small RNAs from wild-type zebrafish gonads
7 GSM315421 Ziwi-IP small RNAs from zebrafish ovaries 44,165 Hubrecht Institute 2008-08-26 [HT Sequencing] Hubrecht Institute Zebrafish Zili- and Ziwi-interacting small RNAs (454 GS FLX system) (GPL7207) other Danio rerio
Danio rerio
unclassified source_name:Ziwi-IP small RNAs from zebrafish ovaries title:Ziwi-IP small RNAs from zebrafish ovaries description:The RNAs were poly(A)-tailed using poly(A) polymerase followed by ligation of a RNA adapter to the 5'-phosphate of the small RNAs. First-strand cDNA synthesis was performed using an oligo(dT)-linker primer and M-MLV-RNase H- reverse transcriptase. The cDNA was PCR amplificated for 16 cycles according to the instructions of 454 Live Sciences. Equal amounts of bar coded cDNA were mixed. The 125 - 140 bp fraction of the cDNA pool was obtained by fractionation of the cDNA on a preparative 6% polyacrylamide (PAA) gel. The eluted cDNA was purified using the Macherey & Nagel NucleoSpin Extract II kit and was seqeunced on 454 GS FLX system.
8 GSM315422 Zili-IP small RNAs from zebrafish testes 41,781 Hubrecht Institute 2008-08-26 [HT Sequencing] Hubrecht Institute Zebrafish Zili- and Ziwi-interacting small RNAs (454 GS FLX system) (GPL7207) other Danio rerio
Danio rerio
testis Zili-IP small RNAs from zebrafish testes
9 GSM315420 Zili-IP small RNAs from zebrafish ovaries 40,450 Hubrecht Institute 2008-08-26 [HT Sequencing] Hubrecht Institute Zebrafish Zili- and Ziwi-interacting small RNAs (454 GS FLX system) (GPL7207) other Danio rerio
Danio rerio
unclassified source_name:Zili-IP small RNAs from zebrafish ovaries title:Zili-IP small RNAs from zebrafish ovaries description:The RNAs were poly(A)-tailed using poly(A) polymerase followed by ligation of a RNA adapter to the 5'-phosphate of the small RNAs. First-strand cDNA synthesis was performed using an oligo(dT)-linker primer and M-MLV-RNase H- reverse transcriptase. The cDNA was PCR amplificated for 16 cycles according to the instructions of 454 Live Sciences. Equal amounts of bar coded cDNA were mixed. The 125 - 140 bp fraction of the cDNA pool was obtained by fractionation of the cDNA on a preparative 6% polyacrylamide (PAA) gel. The eluted cDNA was purified using the Macherey & Nagel NucleoSpin Extract II kit and was seqeunced on 454 GS FLX system.
10 GSM315423 Ziwi-IP small RNAs from zebrafish testes 33,622 Hubrecht Institute 2008-08-26 [HT Sequencing] Hubrecht Institute Zebrafish Zili- and Ziwi-interacting small RNAs (454 GS FLX system) (GPL7207) other Danio rerio
Danio rerio
testis Ziwi-IP small RNAs from zebrafish testes
11 GSM315425 small RNAs from zili mutant zebrafish gonads 19,714 Hubrecht Institute 2008-08-26 [HT Sequencing] Hubrecht Institute Zebrafish Zili- and Ziwi-interacting small RNAs (454 GS FLX system) (GPL7207) RNA Danio rerio
Danio rerio
ovary small RNAs from zili mutant zebrafish gonads
12 GSM352202 H3K4me3_ChIPSeq 0 Radboud University 2008-12-17 [HT Sequencing] Illumina Genome Analyzer (Xenopus (Silurana) tropicalis) (GPL9405) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis
embryo whole embryo
13 GSM352203 H3K27me3_ChIPSeq 0 Radboud University 2008-12-17 [HT Sequencing] Illumina Genome Analyzer (Xenopus (Silurana) tropicalis) (GPL9405) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis
embryo whole embryo
14 GSM352204 RNASeq 0 Radboud University 2008-12-17 [HT Sequencing] Illumina Genome Analyzer (Xenopus (Silurana) tropicalis) (GPL9405) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis
embryo whole embryo
15 GSM371824 D.rerio_adult_pooled infected fish_1,2,3 and 4 (s7) 1,156,021 University of Leiden 2009-02-17 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio
unclassified source_name:pooled whole adult fish (M.marinum-infected) title:D.rerio_adult_pooled infected fish_1,2,3 and 4 (s7) description:s_7
16 GSM371822 D.rerio_adult_pooled infected fish_1,2,3 and 4 (s3) 879,888 University of Leiden 2009-02-17 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio
unclassified source_name:pooled whole adult fish (M.marinum-infected) title:D.rerio_adult_pooled infected fish_1,2,3 and 4 (s3) description:s_3
17 GSM371821 D.rerio_adult_pooled control fish 1,2,3 and 4 (s2) 803,866 University of Leiden 2009-02-17 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio
unclassified source_name:pooled whole adult fish (healthy control) title:D.rerio_adult_pooled control fish 1,2,3 and 4 (s2) description:s_2
18 GSM371823 D.rerio_adult_pooled control fish 1,2,3 and 4 (s6) 785,940 University of Leiden 2009-02-17 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio
unclassified source_name:pooled whole adult fish (healthy control) title:D.rerio_adult_pooled control fish 1,2,3 and 4 (s6) description:s_6
19 GSM372603 oocytes stage III, IV 566,626 Cambridge University 2009-02-20 [HT Sequencing] Illumina Genome Analyzer II (Xenopus (Silurana) tropicalis) (GPL9320) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis
ovary Xenopus tropicalis oocytes stage III, IV
20 GSM372602 oocytes stage I, II 549,672 Cambridge University 2009-02-20 [HT Sequencing] Illumina Genome Analyzer II (Xenopus (Silurana) tropicalis) (GPL9320) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis
ovary Xenopus tropicalis oocytes stage I, II
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