Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(13)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(2)
  GeneChip
(3,128)
  Tiling Array
(76)
  cDNA Array
(6,517)
  Oligo Array
(11,209)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(46)
  HT-Seq
(1,567)
  Other
(5)
  All
(22,581)
 
  brain
(75)
  blood
(27)
  connective
(54)
  reproductive
(100)
  muscular
(40)
  digestive
(3)
  liver
(202)
  lung
(8)
  urinary
(17)
  endo/exo-crine
(0)
  embryo
(467)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(51)
  unclassified
(523)
  all
(1,567)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM389475 X.laevis Xiwi IP Small RNAs 71,850 Brandeis University 2009-04-05 [HT Sequencing] Illumina Genome Analyzer II (Xenopus laevis) (GPL9408) SRA Xenopus laevis
Xenopus laevis
ovary Immunoprecipitation of Xiwi from X.laevis Egg Extract
2 GSM389476 X.laevis Microtubules Small RNAs 68,710 Brandeis University 2009-04-05 [HT Sequencing] 454 GS FLX (Xenopus laevis) (GPL9407) SRA Xenopus laevis
Xenopus laevis
ovary Small RNAs from Microtubules from X.laevis Egg Extract
3 GSM389474 X.laevis Egg Extract Small RNAs 15,392 Brandeis University 2009-04-05 [HT Sequencing] 454 GS FLX (Xenopus laevis) (GPL9407) SRA Xenopus laevis
Xenopus laevis
ovary Small RNAs from X.laevis Egg Extract
4 GSM550779 XEN_11_5a 98 IPMC/CNRS 2010-06-04 [HT Sequencing] AB SOLiD System 2.0 (Xenopus laevis) (GPL10484) SRA Xenopus laevis
Xenopus laevis
skin epidermal explants at stage 11.5
5 GSM550780 XEN_11_5b 98 IPMC/CNRS 2010-06-04 [HT Sequencing] AB SOLiD System 2.0 (Xenopus laevis) (GPL10484) SRA Xenopus laevis
Xenopus laevis
skin epidermal explants at stage 11.6
6 GSM550781 XEN_26a 98 IPMC/CNRS 2010-06-04 [HT Sequencing] AB SOLiD System 2.0 (Xenopus laevis) (GPL10484) SRA Xenopus laevis
Xenopus laevis
skin epidermal explants at stage 26
7 GSM550782 XEN_26b 98 IPMC/CNRS 2010-06-04 [HT Sequencing] AB SOLiD System 2.0 (Xenopus laevis) (GPL10484) SRA Xenopus laevis
Xenopus laevis
skin epidermal explants at stage 27
8 GSM1115088 Control-45 0 UNC at Chapel Hill 2013-04-04 [HT Sequencing] Illumina Genome Analyzer II (Xenopus laevis) (GPL9408) SRA Xenopus laevis
Xenopus laevis
heart control_hearts
9 GSM1115089 Tcf21MO-45 0 UNC at Chapel Hill 2013-04-04 [HT Sequencing] Illumina Genome Analyzer II (Xenopus laevis) (GPL9408) SRA Xenopus laevis
Xenopus laevis
heart Tcf21-depleted_hearts
10 GSM1224372 Ctrl_1 0 University of Texas at Austin 2013-09-04 [HT Sequencing] Illumina HiSeq 2000 (Xenopus laevis) (GPL17682) SRA Xenopus laevis
Xenopus laevis
unclassified source_name:Wild-type animal cap, total poly-(A) RNAs title:Ctrl_1 description:Wild-type animal cap, total poly-(A) RNAs, rep 1
11 GSM1224373 Ctrl_2 0 University of Texas at Austin 2013-09-04 [HT Sequencing] Illumina HiSeq 2000 (Xenopus laevis) (GPL17682) SRA Xenopus laevis
Xenopus laevis
unclassified source_name:Wild-type animal cap, total poly-(A) RNAs title:Ctrl_2 description:Wild-type animal cap, total poly-(A) RNAs, rep 2
12 GSM1224374 RFX2KD_1 0 University of Texas at Austin 2013-09-04 [HT Sequencing] Illumina HiSeq 2000 (Xenopus laevis) (GPL17682) SRA Xenopus laevis
Xenopus laevis
unclassified source_name:Animal cap with RFX2 morpholino treatment title:RFX2KD_1 description:Animal cap with RFX2 morpholino treatment, total poly-(A) RNAs, rep 1
13 GSM1224375 RFX2KD_2 0 University of Texas at Austin 2013-09-04 [HT Sequencing] Illumina HiSeq 2000 (Xenopus laevis) (GPL17682) SRA Xenopus laevis
Xenopus laevis
unclassified source_name:Animal cap with RFX2 morpholino treatment title:RFX2KD_2 description:Animal cap with RFX2 morpholino treatment, total poly-(A) RNAs, rep 2
14 GSM1224376 RFX2GFP 0 University of Texas at Austin 2013-09-04 [HT Sequencing] Illumina HiSeq 2000 (Xenopus laevis) (GPL17682) SRA Xenopus laevis
Xenopus laevis
unclassified source_name:ChIP-seq with RFX2-GFP construct title:RFX2GFP description:ChIP-seq with RFX2-GFP construct
15 GSM1224377 CtrlGFP 0 University of Texas at Austin 2013-09-04 [HT Sequencing] Illumina HiSeq 2000 (Xenopus laevis) (GPL17682) SRA Xenopus laevis
Xenopus laevis
unclassified source_name:ChIP-seq control title:CtrlGFP description:ChIP-seq control
16 GSM1276563 Xla_st3_4_RNA 0 Whitehead Institute for Biomedical Research 2013-11-27 [HT Sequencing] Illumina HiSeq 2000 (Xenopus laevis) (GPL17682) SRA Xenopus laevis
Xenopus laevis
embryo xenopus laevis embryo
17 GSM1276564 Xla_st3_4_RPF 0 Whitehead Institute for Biomedical Research 2013-11-27 [HT Sequencing] Illumina HiSeq 2000 (Xenopus laevis) (GPL17682) SRA Xenopus laevis
Xenopus laevis
embryo xenopus laevis embryo
18 GSM1276565 Xla_st9_RNA 0 Whitehead Institute for Biomedical Research 2013-11-27 [HT Sequencing] Illumina HiSeq 2000 (Xenopus laevis) (GPL17682) SRA Xenopus laevis
Xenopus laevis
embryo xenopus laevis embryo
19 GSM1276566 Xla_st9_RPF 0 Whitehead Institute for Biomedical Research 2013-11-27 [HT Sequencing] Illumina HiSeq 2000 (Xenopus laevis) (GPL17682) SRA Xenopus laevis
Xenopus laevis
embryo xenopus laevis embryo
20 GSM1316825 Xla_st12_12.5_RNA 0 Whitehead Institute for Biomedical Research 2014-01-29 [HT Sequencing] Illumina HiSeq 2000 (Xenopus laevis) (GPL17682) SRA Xenopus laevis
Xenopus laevis
embryo xenopus laevis embryo
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