Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(13)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(2)		   GeneChip
(2,708)		   Tiling Array
(76)		   cDNA Array
(6,040)		   Oligo Array
(8,729)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(46)		   HT-Seq
(626)		   Other
(5)		   All
(18,263)		  
  brain
(54)		   blood
(22)		   connective
(7)		   reproductive
(69)		   muscular
(30)		   digestive
(3)		   liver
(29)		   lung
(8)		   urinary
(15)		   endo/exo-crine
(0)		   embryo
(267)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(13)		   unclassified
(109)		   all
(626)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM389475 X.laevis Xiwi IP Small RNAs 71,850 Brandeis University 2009-04-05 [HT Sequencing] Illumina Genome Analyzer II (Xenopus laevis) (GPL9408) SRA Xenopus laevis
Xenopus laevis		 ovary Immunoprecipitation of Xiwi from X.laevis Egg Extract
2 GSM389476 X.laevis Microtubules Small RNAs 68,710 Brandeis University 2009-04-05 [HT Sequencing] 454 GS FLX (Xenopus laevis) (GPL9407) SRA Xenopus laevis
Xenopus laevis		 ovary Small RNAs from Microtubules from X.laevis Egg Extract
3 GSM389474 X.laevis Egg Extract Small RNAs 15,392 Brandeis University 2009-04-05 [HT Sequencing] 454 GS FLX (Xenopus laevis) (GPL9407) SRA Xenopus laevis
Xenopus laevis		 ovary Small RNAs from X.laevis Egg Extract
4 GSM550779 XEN_11_5a 98 IPMC/CNRS 2010-06-04 [HT Sequencing] AB SOLiD System 2.0 (Xenopus laevis) (GPL10484) SRA Xenopus laevis
Xenopus laevis		 skin epidermal explants at stage 11.5
5 GSM550780 XEN_11_5b 98 IPMC/CNRS 2010-06-04 [HT Sequencing] AB SOLiD System 2.0 (Xenopus laevis) (GPL10484) SRA Xenopus laevis
Xenopus laevis		 skin epidermal explants at stage 11.6
6 GSM550781 XEN_26a 98 IPMC/CNRS 2010-06-04 [HT Sequencing] AB SOLiD System 2.0 (Xenopus laevis) (GPL10484) SRA Xenopus laevis
Xenopus laevis		 skin epidermal explants at stage 26
7 GSM550782 XEN_26b 98 IPMC/CNRS 2010-06-04 [HT Sequencing] AB SOLiD System 2.0 (Xenopus laevis) (GPL10484) SRA Xenopus laevis
Xenopus laevis		 skin epidermal explants at stage 27
8 GSM827025 Stage24_0 0 National Laboratory of Genomics for Biodiversity 2011-11-03 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus laevis) (GPL14834) SRA Xenopus laevis
Xenopus laevis		 retina Retinas from stage 24 embryos
9 GSM827026 Stage24_1 0 National Laboratory of Genomics for Biodiversity 2011-11-03 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus laevis) (GPL14834) SRA Xenopus laevis
Xenopus laevis		 retina Retinas from stage 24 embryos
10 GSM827027 Stage24_2 0 National Laboratory of Genomics for Biodiversity 2011-11-03 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus laevis) (GPL14834) SRA Xenopus laevis
Xenopus laevis		 retina Retinas from stage 24 embryos
11 GSM827028 Stage32_0 0 National Laboratory of Genomics for Biodiversity 2011-11-03 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus laevis) (GPL14834) SRA Xenopus laevis
Xenopus laevis		 retina Retinas from stage 32 embryos
12 GSM827029 Stage32_1 0 National Laboratory of Genomics for Biodiversity 2011-11-03 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus laevis) (GPL14834) SRA Xenopus laevis
Xenopus laevis		 retina Retinas from stage 32 embryos
13 GSM827030 Stage32_2 0 National Laboratory of Genomics for Biodiversity 2011-11-03 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus laevis) (GPL14834) SRA Xenopus laevis
Xenopus laevis		 retina Retinas from stage 32 embryos
14 GSM827031 Stage40_0 0 National Laboratory of Genomics for Biodiversity 2011-11-03 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus laevis) (GPL14834) SRA Xenopus laevis
Xenopus laevis		 retina Retinas from stage 40 embryos
15 GSM827032 Stage40_1 0 National Laboratory of Genomics for Biodiversity 2011-11-03 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus laevis) (GPL14834) SRA Xenopus laevis
Xenopus laevis		 retina Retinas from stage 40 embryos
16 GSM827033 Stage40_2 0 National Laboratory of Genomics for Biodiversity 2011-11-03 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus laevis) (GPL14834) SRA Xenopus laevis
Xenopus laevis		 retina Retinas from stage 40 embryos
17 GSM475282 Xenopus-egg_Y12-associated small RNAs 3,886,632 Memorial Sloan Kettering Cancer Center 2009-11-24 [HT Sequencing] Illumina Genome Analyzer II (Xenopus (Silurana) tropicalis) (GPL9320) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis		 ovary Xenopus-egg_Y12-associated small RNAs
18 GSM744253 Gastrula_dorsal_explant 1,739,435 P. Universidad Catolica de Chile 2011-06-17 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus (Silurana) tropicalis) (GPL13741) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis		 embryo Embryo, dorsal
19 GSM744254 Gastrula_ventral_explant 1,481,303 P. Universidad Catolica de Chile 2011-06-17 [HT Sequencing] Illumina Genome Analyzer IIx (Xenopus (Silurana) tropicalis) (GPL13741) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis		 embryo Embryo, ventral
20 GSM372603 oocytes stage III, IV 566,626 Cambridge University 2009-02-20 [HT Sequencing] Illumina Genome Analyzer II (Xenopus (Silurana) tropicalis) (GPL9320) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis		 ovary Xenopus tropicalis oocytes stage III, IV
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