Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(13)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(2)
  GeneChip
(3,128)
  Tiling Array
(76)
  cDNA Array
(6,517)
  Oligo Array
(11,209)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(46)
  HT-Seq
(1,567)
  Other
(5)
  All
(22,581)
 
  brain
(75)
  blood
(27)
  connective
(54)
  reproductive
(100)
  muscular
(40)
  digestive
(3)
  liver
(202)
  lung
(8)
  urinary
(17)
  endo/exo-crine
(0)
  embryo
(467)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(51)
  unclassified
(523)
  all
(1,567)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM541687 Lateolabrax japonicus_DGE A 151,285 ZheJiang University 2010-05-06 [HT Sequencing] Illumina Genome Analyzer II (Lateolabrax japonicus) (GPL10398) SRA Lateolabrax japonicus
Lateolabrax japonicus
pooled head kidney and spleen tissues
2 GSM541688 Lateolabrax japonicus_DGE B 127,170 ZheJiang University 2010-05-06 [HT Sequencing] Illumina Genome Analyzer II (Lateolabrax japonicus) (GPL10398) SRA Lateolabrax japonicus
Lateolabrax japonicus
pooled head kidney and spleen tissues
3 GSM541795 Lateolabrax japonicus_RNA-Seq1 0 ZheJiang University 2010-05-06 [HT Sequencing] Illumina Genome Analyzer II (Lateolabrax japonicus) (GPL10398) SRA Lateolabrax japonicus
Lateolabrax japonicus
pooled head kidney and spleen tissues
4 GSM540643 WT1 120,232 Yale University 2010-05-04 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 48hpf embryo, WT
5 GSM540646 MZago2 mutant YΔ90 60,799 Yale University 2010-05-04 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 48hpf embryo, MZago2 mutant
6 GSM540645 WT2 27,408 Yale University 2010-05-04 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 48hpf embryo, WT
7 GSM540642 MZdicer mutant1 hu715 26,187 Yale University 2010-05-04 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 48hpf embryo, Mzdicer mutant
8 GSM540644 MZdicer mutant2 hu896 23,821 Yale University 2010-05-04 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 48hpf embryo, Mzdicer mutant
9 GSM1152436 WT input mRNA for Ribosome Profiling 0 Yale University 2013-05-31 [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) SRA Danio rerio
Danio rerio
unclassified source_name:WT input mRNA for Ribosome Profiling title:WT input mRNA for Ribosome Profiling description:processed data file: ribosome_profiling_rpkm.txt
10 GSM1152437 WT ribosome protected fragments for Ribosome Profiling 0 Yale University 2013-05-31 [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) SRA Danio rerio
Danio rerio
unclassified source_name:WT ribosome protected fragments for Ribosome Profiling title:WT ribosome protected fragments for Ribosome Profiling description:processed data file: ribosome_profiling_rpkm.txt
11 GSM1152438 Nanog + SoxB1 MO input mRNA for Ribosome Profiling 0 Yale University 2013-05-31 [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) SRA Danio rerio
Danio rerio
unclassified source_name:Nanog + SoxB1 MO input mRNA for Ribosome Profiling title:Nanog + SoxB1 MO input mRNA for Ribosome Profiling description:processed data file: ribosome_profiling_rpkm.txt
12 GSM1152439 Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling 0 Yale University 2013-05-31 [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) SRA Danio rerio
Danio rerio
unclassified source_name:Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling title:Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling description:processed data file: ribosome_profiling_rpkm.txt
13 GSM1152440 WT 2hpf Total mRNA 0 Yale University 2013-05-31 [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) SRA Danio rerio
Danio rerio
unclassified source_name:WT 2hpf Total mRNA title:WT 2hpf Total mRNA description:processed data file: mRNA_exon_rpkm.txt, total_RNA_intron_rpkm.txt
14 GSM1152441 WT 4hpf poly(A)+ mRNA 0 Yale University 2013-05-31 [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) SRA Danio rerio
Danio rerio
unclassified source_name:WT 4hpf poly(A)+ mRNA title:WT 4hpf poly(A)+ mRNA description:processed data file: mRNA_exon_rpkm.txt
15 GSM1152442 WT 4hpf Total mRNA 0 Yale University 2013-05-31 [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) SRA Danio rerio
Danio rerio
unclassified source_name:WT 4hpf Total mRNA title:WT 4hpf Total mRNA description:processed data file: mRNA_exon_rpkm.txt, total_RNA_intron_rpkm.txt
16 GSM1152443 Alpha-amanitin 4hpf Total mRNA 0 Yale University 2013-05-31 [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) SRA Danio rerio
Danio rerio
unclassified source_name:Alpha-amanitin 4hpf Total mRNA title:Alpha-amanitin 4hpf Total mRNA description:processed data file: mRNA_exon_rpkm.txt, total_RNA_intron_rpkm.txt
17 GSM1152444 U1U2 MO 4hpf Total mRNA 0 Yale University 2013-05-31 [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) SRA Danio rerio
Danio rerio
unclassified source_name:U1U2 MO 4hpf Total mRNA title:U1U2 MO 4hpf Total mRNA description:processed data file: mRNA_exon_rpkm.txt, total_RNA_intron_rpkm.txt
18 GSM1152445 Nanog MO 4hpf Total mRNA 0 Yale University 2013-05-31 [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) SRA Danio rerio
Danio rerio
unclassified source_name:Nanog MO 4hpf Total mRNA title:Nanog MO 4hpf Total mRNA description:processed data file: mRNA_exon_rpkm.txt, total_RNA_intron_rpkm.txt
19 GSM1152446 SoxB1 MO 4hpf Total mRNA 0 Yale University 2013-05-31 [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) SRA Danio rerio
Danio rerio
unclassified source_name:SoxB1 MO 4hpf Total mRNA title:SoxB1 MO 4hpf Total mRNA description:processed data file: mRNA_exon_rpkm.txt, total_RNA_intron_rpkm.txt
20 GSM1152447 Nanog + SoxB1 MO 4hpf Total mRNA 0 Yale University 2013-05-31 [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) SRA Danio rerio
Danio rerio
unclassified source_name:Nanog + SoxB1 MO 4hpf Total mRNA title:Nanog + SoxB1 MO 4hpf Total mRNA description:processed data file: mRNA_exon_rpkm.txt, total_RNA_intron_rpkm.txt
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