| 1 |
GPL8222 |
Zoarces viviparus validation microarray |
124,992 |
University of Gothenburg |
2009-02-23 |
Department of Zoology, University of Gothenburg / Febit gmbh, Heidelberg, Germany |
Zoarces viviparus
 |
Oligo Array |
in situ oligonucleotide, Zoarces viviparus validation microarray, This microarray contains 117,316 probes used to evaluate the transcript assembly described in Kristiansson et al 2009. |
| 2 |
GPL2715 |
Zf_16.5K_oligo_COMP_v3Apx |
16,512 |
National University of Singapore |
2005-08-03 |
Genome Institute of Singapore |
Danio rerio
 |
Oligo Array |
spotted oligonucleotide, Zf_16.5K_oligo_COMP_v3Apx, This set includes 16416 oligo probes (60 mers) designed by Compugen-Sigma. Spotted long oligonucleotide array on glass |
| 3 |
GPL5720 |
Zebrafish Oligonucleotide Library (Compugen) |
17,280 |
University of North Carolina at Chapel Hill |
2007-08-07 |
Compugen |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish Oligonucleotide Library (Compugen), This set of zebrafish oligonucleotides was designed by Compugen and synthesized by Sigma-Genosys. The set consists of 16,399 65-mer oligonucleotides representing 16,228 gene clusters and 171 control elements. Compugen and Sigma-Genosys no longer sell or support this product. Sequences are not for commercial use, copyright reserved to Compugen 2002. |
| 4 |
GPL7556 |
Zebrafish Oligonucleotide Library (Compugen) |
16,399 |
University of Oregon |
2008-11-04 |
Compugen |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish Oligonucleotide Library (Compugen), This set of zebrafish oligonucleotides was designed by Compugen and synthesized by Sigma-Genosys. The set consists of 16,399 65-mer oligonucleotides representing 16,228 gene clusters and 171 control elements. Compugen and Sigma-Genosys no longer sell or support this product. Sequences are not for commercial use, copyright reserved to Compugen 2002. |
| 5 |
GPL3721 |
Zebrafish Oligonucleotide Array (Compugen) |
16,399 |
University of Chicago |
2006-05-02 |
Compugen |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish Oligonucleotide Array (Compugen), The Compugen set of zebrafish oligonucleotides was designed by Compugen based on ESTs, mostly from the Washington University Zebrafish Genome Assemblies. Compugen no longer sell or support this product. Sequences are not for commercial use, copyright reserved to Compugen 2002. |
| 6 |
GPL1743 |
Zebrafish nucleotide array |
15,174 |
Leiden University |
2004-12-10 |
|
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish nucleotide array, Microarrays of the MWG 14k Zebrafish Oligonucleotide Set were produced using the facilities of the Leiden Genome Technology Center (http://www.lgtc.nl). Oligonucleotides were dissolved in 150mM phosphate buffer (pH 8.5) to a concentration of 20 µM. With Omnigrid 100 (Genemachines) oligonucleotides were spotted on Codelink activated slides (Amersham Biosciences) according to the Amersham Codelink protocol and as described in (‘t Hoen et al 2003 and Meijer et al 2004). Microarrays were spotted according to the MIAME guidelines with 15.532 unique zebrafish oligonucleotides from the MWG oligonucleotide set. Ambion’s arraycontrol oligonucleotides (8 sense oligos) and 3 custom designed oligonucleotides were spotted together with the MWG oligonucleotide set. Spotted Codelink activated slides were treated with blocking solution and washed according to the manufacturer’s instructions. |
| 7 |
GPL9074 |
Zebrafish custom Agilent temperature_cadmium microarray |
15,208 |
University of Antwerp |
2009-08-21 |
Agilent |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Zebrafish custom Agilent temperature_cadmium microarray, A custom cadmium and temperature specific 15k microarray was designed. For this purpose 16 Agilent zebrafish 44k full genome microarray (version V2, AMADID 019161, containing 43,604 unique probes) hybridizations were performed on a subsample of the test samples from a temperature experiment and a cadmium exposure (performed with the intention of comparing temperature and cadmium responses in zebrafish). Probes that were differentially expressed under these conditions were included in the custom design and supplemented with GO-annotated probes from the full genome microarray probe set. |
| 8 |
GPL3767 |
Zebrafish 44K oligo promoter array_Slide 2 of 2 |
44,290 |
Whitehead Institute |
2006-05-15 |
Agilent Technology |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish 44K oligo promoter array_Slide 2 of 2, Microarrays were designed as described below and manufactured by Agilent Technologies (www.agilent.com). Further information on design can be found at http://jura.wi.mit.edu/bioc/gbell/zfish_chip/. The Whitehead zebrafish promoter chipsets were designed for large-scale chromatin immunoprecipitation using microarrays (ChIP chips). The chipsets represent the promoters of about 11,000 transcriptional units derived using transcript sequences from Refseq, Ensembl, Vega, ZGC, and the Zon Lab. The 2-chipset represents proximal promoters (-1500 nt to +500 nt from the transciptional start site [tss]) on two microarrays of the same density. Probes are spaced an average of 250 nt apart. |
| 9 |
GPL3766 |
Zebrafish 44K oligo promoter array_Slide 1 of 2 |
44,290 |
Whitehead Institute |
2006-05-15 |
Agilent Technology |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish 44K oligo promoter array_Slide 1 of 2, Microarrays were designed as described below and manufactured by Agilent Technologies (www.agilent.com). Further information on design can be found at http://jura.wi.mit.edu/bioc/gbell/zfish_chip/. The Whitehead zebrafish promoter chipsets were designed for large-scale chromatin immunoprecipitation using microarrays (ChIP chips). The chipsets represent the promoters of about 11,000 transcriptional units derived using transcript sequences from Refseq, Ensembl, Vega, ZGC, and the Zon Lab. The 2-chipset represents proximal promoters (-1500 nt to +500 nt from the transciptional start site [tss]) on two microarrays of the same density. Probes are spaced an average of 250 nt apart. |
| 10 |
GPL4609 |
Zebrafish 34K Oligo array |
35,328 |
nih |
2006-11-29 |
NHGRI Microarray Core facility |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish 34K Oligo array, |
| 11 |
GPL4021 |
Zebrafish 34K (Compugen, MWG, Operon) |
34,647 |
National Institutes of Health |
2006-07-20 |
National Human Genome Research Institute / National Institutes of Health (NHGRI/NIH) |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish 34K (Compugen, MWG, Operon), The zebra fish 35k chip is a combination of 16,399 60 mer oligos from Compugen http://www.labonweb.com/oligo/libraries.htm 14,067 50 mers from MWG. http://www.ocimumbio.com/web/arrays/oligo_zebrafish.asp and 3500 70 mer oligos from Operon. http://www.operon.com/arrays/oligosets_zebra.php To look for the genes in the Compugen/MWG original list, click here (http://magic2.nhgri.nih.gov/mcore/zebrafish_genelist.txt) General questions or comments about this specific platform please direct to: Abdel G. Elkahloun: abdel@mail.nih.gov (tel. 301-402-3170 ) Settara Chandrasekharappa: chandra@mail.nih.gov (tel. 301-402-2344) |
| 12 |
GPL4014 |
Zebrafish 33K (Compugen, MWG, Operon) |
33,640 |
National Institutes of Health |
2006-07-19 |
National Human Genome Research Institute / National Institutes of Health (NHGRI/NIH) |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish 33K (Compugen, MWG, Operon), The zebra fish 35k chip is a combination of 16,399 60 mer oligos from Compugen http://www.labonweb.com/oligo/libraries.htm 14,067 50 mers from MWG. http://www.ocimumbio.com/web/arrays/oligo_zebrafish.asp and 3500 70 mer oligos from Operon. http://www.operon.com/arrays/oligosets_zebra.php To look for the genes in the Compugen/MWG original list, click here (http://magic2.nhgri.nih.gov/mcore/zebrafish_genelist.txt) General questions or comments about this specific platform please direct to: Abdel G. Elkahloun: abdel@mail.nih.gov (tel. 301-402-3170 ) Settara Chandrasekharappa: chandra@mail.nih.gov (tel. 301-402-2344) |
| 13 |
GPL10182 |
Zebrafish 23K oligo_COMP-GIS_v4 |
23,232 |
National University of Singapore |
2010-03-15 |
Genome Institute of Singapore |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish 23K oligo_COMP-GIS_v4, |
| 14 |
GPL7133 |
Zebrafish 12kb promoter 44K array_slide 9 of 9 |
44,290 |
University of Cambridge |
2008-08-04 |
Agilent Technologies |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Zebrafish 12kb promoter 44K array_slide 9 of 9, |
| 15 |
GPL7132 |
Zebrafish 12kb promoter 44K array_slide 8 of 9 |
44,290 |
University of Cambridge |
2008-08-04 |
Agilent Technologies |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Zebrafish 12kb promoter 44K array_slide 8 of 9, |
| 16 |
GPL7131 |
Zebrafish 12kb promoter 44K array_slide 7 of 9 |
44,290 |
University of Cambridge |
2008-08-04 |
Agilent Technologies |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Zebrafish 12kb promoter 44K array_slide 7 of 9, |
| 17 |
GPL7130 |
Zebrafish 12kb promoter 44K array_slide 6 of 9 |
44,290 |
University of Cambridge |
2008-08-04 |
Agilent Technologies |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Zebrafish 12kb promoter 44K array_slide 6 of 9, |
| 18 |
GPL7129 |
Zebrafish 12kb promoter 44K array_slide 5 of 9 |
44,290 |
University of Cambridge |
2008-08-04 |
Agilent Technologies |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Zebrafish 12kb promoter 44K array_slide 5 of 9, |
| 19 |
GPL7128 |
Zebrafish 12kb promoter 44K array_slide 4 of 9 |
44,290 |
University of Cambridge |
2008-08-04 |
Agilent Technologies |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Zebrafish 12kb promoter 44K array_slide 4 of 9, |
| 20 |
GPL7127 |
Zebrafish 12kb promoter 44K array_slide 3 of 9 |
44,290 |
University of Cambridge |
2008-08-04 |
Agilent Technologies |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Zebrafish 12kb promoter 44K array_slide 3 of 9, |