Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(13)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(2)		   GeneChip
(2,708)		   Tiling Array
(76)		   cDNA Array
(6,040)		   Oligo Array
(8,729)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(46)		   HT-Seq
(626)		   Other
(5)		   All
(18,263)		  
  brain
(4)		   blood
(4)		   connective
(0)		   reproductive
(3)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(2)		   unclassified
(0)		   all
(13)		  
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM85229 Zebrafish ovarian follicles 11,399 Université Bordeaux 2005-11-25 [SAGE NlaIII] SAGE:10:NlaIII:Danio rerio (GPL3209) SAGE Danio rerio
Danio rerio		 ovary full-grown ovarian follicles
2 GSM139481 whole brain_chinook_spring 9,492 Hatfield Marine Science Center, Oregon State University 2006-10-10 [SAGE NlaIII] SAGE:17:NlaIII:Oncorhynchus tshawytscha (GPL4407) SAGE Oncorhynchus tshawytscha
Oncorhynchus tshawytscha		 cerebrum whole brain_chinook_spring
3 GSM139482 whole brain_chinook_ocean 9,247 Hatfield Marine Science Center, Oregon State University 2006-10-10 [SAGE NlaIII] SAGE:17:NlaIII:Oncorhynchus tshawytscha (GPL4407) SAGE Oncorhynchus tshawytscha
Oncorhynchus tshawytscha		 cerebrum whole brain_chinook_ocean
4 GSM139480 whole brain_chinook_fall 8,054 Hatfield Marine Science Center, Oregon State University 2006-10-10 [SAGE NlaIII] SAGE:17:NlaIII:Oncorhynchus tshawytscha (GPL4407) SAGE Oncorhynchus tshawytscha
Oncorhynchus tshawytscha		 cerebrum whole brain_chinook_fall
5 GSM36610 SR 3,193 Universite' Claude Bernard Lyon I 2004-11-30 [SAGE NlaIII] SAGE:10:NlaIII:Gallus gallus (GPL1724) SAGE Gallus gallus
Gallus gallus		 peripheral blood erythroid progenitors cells
6 GSM31734 dt40sage 21,308 GSF-National Reseearch Center 2004-10-04 [SAGE NlaIII] SAGE:17:NlaIII:Gallus gallus (GPL1477) SAGE Gallus gallus
Gallus gallus		 lymphnode This library represents total RNA from DT40 Cre1 cells This work was supported by the EU grants 'Genetics in a cell line' and 'Mechanisms of gene integration' Library constructed in the laboratory of Jean-Marie Buerstedde, M.D. submitted for publication with the title: Evaluation of the chicken transcriptome by SAGE of B cell and the DT40 cell line Organ: bursa of Fabricius Lab host: E. coli Vector: pZErO-1 Vector type: plasmid Library treatment: non-normalized Keywords = chicken transcriptome SAGE Bursal cell DT40 Lot batch =
7 GSM36611 Diff 3,479 Universite' Claude Bernard Lyon I 2004-11-30 [SAGE NlaIII] SAGE:10:NlaIII:Gallus gallus (GPL1724) SAGE Gallus gallus
Gallus gallus		 peripheral blood erythroid progenitors cells induced to differentiate for 24 hours
8 GSM322870 Danio rerio_AB_mind bomb_24hpf_wild 22,936 Kyungpook National University 2008-09-22 [SAGE NlaIII] SAGE:10:NlaIII:Danio rerio (GPL3209) SAGE Danio rerio
Danio rerio		 pooled SAGE analysis was carried out as described (Velculescu et al., 1995) but was modified slightly according to Lee et al (Lee et al., 2007). We performed a low-cycle PCR (14 cycles) using the GeneAmp PCR System 2400 (Applied Biosystem, Foster City, CA) to amplify 3’cDNA in order to generate a sufficient amount of templates for SAGE analysis. The sense primer used was a SAGE primer 1 (5’-GGA TTT GCT GGT GCA GTA CA-3’) or SAGE primer 2 (5’-CTG CTC GAA TTC AAG CTT CT-3’); the antisense primer used was 5’-biotin- ACT ATC TAG AGC GGC CGC TT-3’, which was located in the 3’ end of all cDNAs generated from the anchored oligo(dT) primers.
9 GSM322871 Danio rerio_AB_mind bomb_24hpf_mutant(ta52b) 22,936 Kyungpook National University 2008-09-22 [SAGE NlaIII] SAGE:10:NlaIII:Danio rerio (GPL3209) SAGE Danio rerio
Danio rerio		 pooled SAGE analysis was carried out as described (Velculescu et al., 1995) but was modified slightly according to Lee et al (Lee et al., 2007). We performed a low-cycle PCR (14 cycles) using the GeneAmp PCR System 2400 (Applied Biosystem, Foster City, CA) to amplify 3’cDNA in order to generate a sufficient amount of templates for SAGE analysis. The sense primer used was a SAGE primer 1 (5’-GGA TTT GCT GGT GCA GTA CA-3’) or SAGE primer 2 (5’-CTG CTC GAA TTC AAG CTT CT-3’); the antisense primer used was 5’-biotin- ACT ATC TAG AGC GGC CGC TT-3’, which was located in the 3’ end of all cDNAs generated from the anchored oligo(dT) primers.
10 GSM4899 Control SST 19,101 USDA ARS Animal and Natural Resources Institute 2003-03-19 [SAGE NlaIII] SAGE:10:NlaIII:Meleagris gallopavo (GPL279) SAGE Meleagris gallopavo
Meleagris gallopavo		 testis sperm storage tubules
11 GSM31733 busage 24,064 GSF-National Reseearch Center 2004-10-04 [SAGE NlaIII] SAGE:17:NlaIII:Gallus gallus (GPL1477) SAGE Gallus gallus
Gallus gallus		 lymphnode This library represents total RNA from bursal tissue of 20 day old CB-inbred chicks This work was supported by the EU grants 'Genetics in a cell line' and 'Mechanisms of gene integration' Library constructed in the laboratory of Jean-Marie Buerstedde, M.D. submitted for publication with the title: Evaluation of the chicken transcriptome by SAGE of B cell and the DT40 cell line Organ: bursa of Fabricius Lab host: E. coli Vector: pZErO-1 Vector type: plasmid Library treatment: non-normalized Keywords = chicken transcriptome SAGE Bursal cell DT40 Lot batch =
12 GSM651351 Analysis of Gene Expression in the Chicken Otocyst 16,008 Stanford University 2011-01-07 [SAGE NlaIII] SAGE:17:NlaIII:Gallus gallus (GPL1477) SAGE Gallus gallus
Gallus gallus		 cerebrum Chicken otocyst, Embryonic day 3
13 GSM4900 AI SST 18,030 USDA ARS Animal and Natural Resources Institute 2003-03-19 [SAGE NlaIII] SAGE:10:NlaIII:Meleagris gallopavo (GPL279) SAGE Meleagris gallopavo
Meleagris gallopavo		 testis sperm storage tubules
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