Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(18,625)		   Primates
(206)		   Rodents
(12,612)		   Mammals
(782)		   Vertebrates
(1,156)		   Invertebrates
(4,045)		   Plants
(6,642)		   Bacteria
(2,980)		   Viruses
(50)		   Phages
(4)		   Unclassified
(287)		   All
(47,440)		  
  SAGE NlaIII
(7)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(237)		   Tiling Array
(14)		   cDNA Array
(257)		   Oligo Array
(506)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(129)		   Other
(1)		   All
(1,156)		  
Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation (GSE19413) [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 1 (GPL9778) Radboud University 2009-12-10 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 2,160,000
(2,160,000 x 1) 		1 by_platform
by_series
2 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation (GSE19413) [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 2 (GPL9779) Radboud University 2009-12-10 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 2,160,000
(2,160,000 x 1) 		1 by_platform
by_series
3 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation (GSE19413) [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 3 (GPL9780) Radboud University 2009-12-10 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 2,160,000
(2,160,000 x 1) 		1 by_platform
by_series
4 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation (GSE19413) [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 4 (GPL9781) Radboud University 2009-12-10 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 2,160,000
(2,160,000 x 1) 		1 by_platform
by_series
5 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation (GSE19413) [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5a (GPL9782) Radboud University 2009-12-10 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 720,000
(720,000 x 1) 		1 by_platform
by_series
6 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation (GSE19413) [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5b (GPL9783) Radboud University 2009-12-10 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 720,000
(720,000 x 1) 		1 by_platform
by_series
7 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation (GSE19413) [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5c (GPL9784) Radboud University 2009-12-10 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 191,446
(191,446 x 1) 		1 by_platform
by_series
8 An initial map of chromosomal segmental copy number variations in chickens (GSE19469) [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) Tennessee State University 2009-12-14 Gallus gallus
Gallus gallus		 3,850,020
(385,002 x 10) 		10 by_platform
by_series
9 Chromatin signature of embryonic pluripotency is established during zygotic genome activation [Danio rerio] (GSE20023) [Tiling Array] NimbleGen Danio rerio 385K Zv7 tiling array (GPL9970) Tongji University 2010-01-25 Danio rerio
Danio rerio		 4,207,284
(350,607 x 12) 		12 by_platform
by_series
10 Mapping of H3K4 and H3K27 trimethylation in zebrafish cells (ChIP-chip) (GSE23691) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2010-08-18 Danio rerio
Danio rerio		 8,672,900
(2,168,225 x 4) 		4 by_platform
by_series
11 Mapping of H3K4 and H3K27 trimethylation in zebrafish cells (GSE23872) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2010-08-30 Danio rerio
Danio rerio		 8,672,900
(2,168,225 x 4) 		4 by_platform
by_series
12 Marking of the genome by H3K4 methylation prior to embryonic gene activation (GSE27314) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2011-02-14 Danio rerio
Danio rerio		 54,205,625
(2,168,225 x 25) 		25 by_platform
by_series
13 Developmental features of DNA methylation during activation of the embryonic zebrafish genome (GSE33236) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2011-10-26 Danio rerio
Danio rerio		 26,018,700
(2,168,225 x 12) 		2 10 by_platform
by_series
14 Genome-wide copy number variant analysis in inbred lines of chickens with different susceptibility to Marek’s disease (GSE38689) [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) University of Maryland 2012-06-13 Gallus gallus
Gallus gallus		 2,310,012
(385,002 x 6) 		6 by_platform
by_series
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