Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,761)		   Primates
(39)		   Rodents
(1,779)		   Mammals
(312)		   Vertebrates
(411)		   Invertebrates
(1,032)		   Plants
(2,239)		   Bacteria
(1,690)		   Viruses
(78)		   Phages
(8)		   Unclassified
(430)		   All
(11,831)		  
  SAGE NlaIII
(9)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(10)		   Tiling Array
(10)		   cDNA Array
(79)		   Oligo Array
(227)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(71)		   Other
(1)		   All
(411)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9784 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5c 191,446 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5c, JGI 4.1 (UCSC xenTro2)
2 GPL9783 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5b 720,000 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5b, JGI 4.1 (UCSC xenTro2)
3 GPL9782 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5a 720,000 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5a, JGI 4.1 (UCSC xenTro2)
4 GPL9781 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 4 2,160,000 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 4, JGI 4.1 (UCSC xenTro2)
5 GPL9780 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 3 2,160,000 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 3, JGI 4.1 (UCSC xenTro2)
6 GPL9779 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 2 2,160,000 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 2, JGI 4.1 (UCSC xenTro2)
7 GPL9778 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 1 2,160,000 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 1, JGI 4.1 (UCSC xenTro2)
8 GPL9970 NimbleGen Danio rerio 385K Zv7 tiling array 350,607 Tongji University 2010-01-25 Nimblegen Danio rerio
Danio rerio		 Tiling Array in situ oligonucleotide, NimbleGen Danio rerio 385K Zv7 tiling array, UCSC zebrafish genome sequence Zv7 385K 50mer probes were printed and were spaced by 30 bp resulting in 80 bp resolution. Tiled regions include specifically selected genes (i.e. maternally provided genes, genes that are transcribed at zygotic genome activation, important developmental genes and known late genes) as well as two large contiguous genomic regions on linkage groups 3 and 11. The .ndf and .pos files are linked below as supplementary files.
9 GPL9799 NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH 385,002 Tennessee State University 2009-12-14 NimbleGen Gallus gallus
Gallus gallus		 Tiling Array in situ oligonucleotide, NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH, UCSC May 2006 chicken (Gallus gallus) v2.1 draft assembly
10 GPL10835 090313_Zv7_PC_ChIP_HX1 2,168,225 University of Oslo 2010-08-18 NimbleGen Danio rerio
Danio rerio		 Tiling Array in situ oligonucleotide, 090313_Zv7_PC_ChIP_HX1, Sanger Zv7 assembly Tiling of TSS (15kb upstream, 5kb downstream) native array description file: 090313_Zv7_PC_ChIP_HX1.ndf native array description file: 090313_Zv7_PC_ChIP_HX1.pos
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