Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(13)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(2)
  GeneChip
(3,128)
  Tiling Array
(76)
  cDNA Array
(6,517)
  Oligo Array
(11,209)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(46)
  HT-Seq
(1,567)
  Other
(5)
  All
(22,581)
 
  brain
(0)
  blood
(6)
  connective
(0)
  reproductive
(2)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(7)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(61)
  all
(76)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM482775 H3K4me3 replicate1a 2,160,000 Radboud University 2009-12-10 [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 1 (GPL9778) genomic Xenopus (Silurana) tropicalis
Xenopus tropicalis
embryo H3K4me3 ChIP DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12 Input DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12
2 GSM482776 H3K4me3 replicate1b 2,160,000 Radboud University 2009-12-10 [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 2 (GPL9779) genomic Xenopus (Silurana) tropicalis
Xenopus tropicalis
embryo H3K4me3 ChIP DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12 Input DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12
3 GSM482777 H3K4me3 replicate1c 2,160,000 Radboud University 2009-12-10 [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 3 (GPL9780) genomic Xenopus (Silurana) tropicalis
Xenopus tropicalis
embryo H3K4me3 ChIP DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12 Input DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12
4 GSM482778 H3K4me3 replicate1d 2,160,000 Radboud University 2009-12-10 [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 4 (GPL9781) genomic Xenopus (Silurana) tropicalis
Xenopus tropicalis
embryo H3K4me3 ChIP DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12 Input DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12
5 GSM482779 H3K4me3 replicate1e 720,000 Radboud University 2009-12-10 [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5a (GPL9782) genomic Xenopus (Silurana) tropicalis
Xenopus tropicalis
embryo H3K4me3 ChIP DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12 Input DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12
6 GSM482780 H3K4me3 replicate1f 720,000 Radboud University 2009-12-10 [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5b (GPL9783) genomic Xenopus (Silurana) tropicalis
Xenopus tropicalis
embryo H3K4me3 ChIP DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12 Input DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12
7 GSM482781 H3K4me3 replicate1g 191,446 Radboud University 2009-12-10 [Tiling Array] NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5c (GPL9784) genomic Xenopus (Silurana) tropicalis
Xenopus tropicalis
embryo H3K4me3 ChIP DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12 Input DNA from Xenopus tropicalis embryos, Nieuwkoop-Faber stage 11-12
8 GSM485166 6191_BF 385,002 Tennessee State University 2009-12-14 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
unclassified source_name:6191_BF 6281_BM title:6191_BF description:Segmental copy number variation
9 GSM485167 6953_LM 385,002 Tennessee State University 2009-12-14 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
unclassified source_name:6953_LM 6281_BM title:6953_LM description:Segmental copy number variation
10 GSM485168 6262_BM 385,002 Tennessee State University 2009-12-14 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
unclassified source_name:6262_BM 6281_BM title:6262_BM description:Segmental copy number variation
11 GSM485169 2916_BF 385,002 Tennessee State University 2009-12-14 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
unclassified source_name:2916_BF 6281_BM title:2916_BF description:Segmental copy number variation
12 GSM485170 6951_LM 385,002 Tennessee State University 2009-12-14 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
unclassified source_name:6951_LM 6281_BM title:6951_LM description:Segmental copy number variation
13 GSM485171 5849_BF 385,002 Tennessee State University 2009-12-14 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
unclassified source_name:5849_BF 6281_BM title:5849_BF description:Segmental copy number variation
14 GSM485172 6870_LF 385,002 Tennessee State University 2009-12-14 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
unclassified source_name:6870_LF 6281_BM title:6870_LF description:Segmental copy number variation
15 GSM485173 6884_LF 385,002 Tennessee State University 2009-12-14 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
unclassified source_name:6884_LF 6281_BM title:6884_LF description:Segmental copy number variation
16 GSM485174 1003_RM 385,002 Tennessee State University 2009-12-14 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
unclassified source_name:1003_RM 6281_BM title:1003_RM description:Segmental copy number variation
17 GSM485175 1007_RM 385,002 Tennessee State University 2009-12-14 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
unclassified source_name:1007_RM 6281_BM title:1007_RM description:Segmental copy number variation
18 GSM947585 L63-2 385,002 University of Maryland 2012-06-13 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
peripheral blood Genomic DNA from L63 red blood cells Genomic DNA from Red Junglefowl red blood cells
19 GSM947586 L72-1 385,002 University of Maryland 2012-06-13 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
peripheral blood Genomic DNA from L72 red blood cells Genomic DNA from Red Junglefowl red blood cells
20 GSM947588 RCS-L 385,002 University of Maryland 2012-06-13 [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) genomic Gallus gallus
Gallus gallus
peripheral blood Genomic DNA from RCS-L red blood cells Genomic DNA from Red Junglefowl red blood cells
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