Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(58)		   Primates
(1)		   Rodents
(35)		   Mammals
(9)		   Vertebrates
(10)		   Invertebrates
(18)		   Plants
(42)		   Bacteria
(57)		   Viruses
(2)		   Phages
(1)		   Unclassified
(15)		   All
(249)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(1)		   Tiling Array
(1)		   cDNA Array
(0)		   Oligo Array
(8)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(10)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL13540 IHB miR Zebrafish 14 0.3K 347 Institute of Hydrobiology 2011-05-16 LC Sciences Danio rerio
Danio rerio		 Oligo Array in situ oligonucleotide, IHB miR Zebrafish 14 0.3K,
2 GPL15455 LC Sciences Gallus gallus miRChicken_15 542 south china agricultural university 2012-04-17 LC Sciences Gallus gallus
Gallus gallus		 Oligo Array in situ oligonucleotide, LC Sciences Gallus gallus miRChicken_15, Part No.: MRA-1005 Name: Chicken miRNA Array Version No.: miRChicken_15 No. of Unique Chicken Probes: 542; No. of Repeats: 6 Based on Sanger miRBase Release 15.
3 GPL13286 SHOU miRNA Fishes 1K 987 Shanghai Ocean University 2011-03-16 LC Sciences Paralichthys olivaceus
Paralichthys olivaceus		 Oligo Array in situ oligonucleotide, SHOU miRNA Fishes 1K,
4 GPL10225 Peking University Chicken miRNA 4k array 1,772 Peking University 2010-03-18 LC Sciences Gallus gallus
Gallus gallus		 Oligo Array in situ oligonucleotide, Peking University Chicken miRNA 4k array, Arrays contained 1721 DNA probes, including a non-redundant set of probes complementary to 440 known chicken miRNAs, 78 known chicken miRNA* and 1124 unknown chicken small RNAs from our deep sequencing data (denoted as 'nrxxxx', the corresponding sequences can be found in the raw data file), as well as probes for 78 predicted chicken snoRNAs and positive control probes for chicken U6 snRNA. Negative controls to normalize the data with low-density signals were also included.
5 GPL10234 Affymetrix Chicken Genome Array [GgChicken_ENTREZG10] 12,495 Peking University 2010-03-22 Affymetrix Gallus gallus
Gallus gallus		 GeneChip in situ oligonucleotide, Affymetrix Chicken Genome Array [GgChicken_ENTREZG10],
6 GPL15450 Agilent-015064 D. rerio (Zebrafish) Oligo Microarray 4x44K (V3) 43,603 Shanghai institute for biology science 2012-04-17 Agilent Technologies Danio rerio
Danio rerio		 Oligo Array in situ oligonucleotide, Agilent-015064 D. rerio (Zebrafish) Oligo Microarray 4x44K (V3), Agilent D. rerio (Zebrafish) Oligo Microarray V3, 4*44K. The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL14664.
7 GPL15962 Agilent-037580 Plecoglossus altivelis SweetFishGene 50K 49,077 BioChainBJ 2012-08-20 Agilent Technologies Plecoglossus altivelis
Plecoglossus altivelis		 Oligo Array in situ oligonucleotide, Agilent-037580 Plecoglossus altivelis SweetFishGene 50K,
8 GPL8231 Gallus gallus 55k 080317_Chicken_galGal3_expr 55,316 Institute of Microbiology 2009-02-26 NimbleGen Gallus gallus
Gallus gallus		 Oligo Array in situ oligonucleotide, Gallus gallus 55k 080317_Chicken_galGal3_expr, The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files.
9 GPL9970 NimbleGen Danio rerio 385K Zv7 tiling array 350,607 Tongji University 2010-01-25 Nimblegen Danio rerio
Danio rerio		 Tiling Array in situ oligonucleotide, NimbleGen Danio rerio 385K Zv7 tiling array, UCSC zebrafish genome sequence Zv7 385K 50mer probes were printed and were spaced by 30 bp resulting in 80 bp resolution. Tiled regions include specifically selected genes (i.e. maternally provided genes, genes that are transcribed at zygotic genome activation, important developmental genes and known late genes) as well as two large contiguous genomic regions on linkage groups 3 and 11. The .ndf and .pos files are linked below as supplementary files.
10 GPL13398 Agilent chicken CGH array 420,288 China Agricultural University 2011-04-11 Agilent Gallus gallus
Gallus gallus		 Oligo Array in situ oligonucleotide, Agilent chicken CGH array, Agilent design ID 031112. Platform is based on chicken genome build WUGSC 2.1/galGal3.
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