Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(7)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(234)		   Tiling Array
(14)		   cDNA Array
(246)		   Oligo Array
(491)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(117)		   Other
(1)		   All
(1,115)		  
1   |   2   |   3   |   4   |   5      »      [56]
Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis (GSE28328) [Oligo Array] Agilent-026161 ZV81M (GPL13352) Brigham and Women's Hospital/Harvard Medical School 2011-04-01 Danio rerio
Danio rerio		 83,765,376
(974,016 x 86) 		86 by_platform
by_series
2 Identification and functional impact of genomic copy number variants in zebrafish, an important human disease model (Zebrafish Strain CNVs) (CGH ZV81M 2) (GSE28278) [Oligo Array] Agilent-026161 ZV81M (GPL13352) Brigham and Women's Hospital/Harvard Medical School 2011-03-30 Danio rerio
Danio rerio		 74,025,216
(974,016 x 76) 		76 by_platform
by_series
3 Marking of the genome by H3K4 methylation prior to embryonic gene activation (GSE27314) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2011-02-14 Danio rerio
Danio rerio		 54,205,625
(2,168,225 x 25) 		25 by_platform
by_series
4 Developmental features of DNA methylation during activation of the embryonic zebrafish genome (GSE33236) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2011-10-26 Danio rerio
Danio rerio		 26,018,700
(2,168,225 x 12) 		2 10 by_platform
by_series
5 The impact of experience-dependent and independent factors on gene expression in songbird brain (GSE36748) [cDNA Array] Songbird Neurogenomics Initiative 20K Array (GPL9554) University of Illinois 2012-03-23 Taeniopygia guttata,Sturnus vulgaris
Taeniopygia guttata,Sturnus vulgaris		 9,838,080
(20,160 x 488) 		488 by_platform
by_series
6 Mapping of H3K4 and H3K27 trimethylation in zebrafish cells (ChIP-chip) (GSE23691) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2010-08-18 Danio rerio
Danio rerio		 8,672,900
(2,168,225 x 4) 		4 by_platform
by_series
7 Mapping of H3K4 and H3K27 trimethylation in zebrafish cells (GSE23872) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2010-08-30 Danio rerio
Danio rerio		 8,672,900
(2,168,225 x 4) 		4 by_platform
by_series
8 The singing genome: Core and region enriched gene expression define behaviorally regulated gene networks (GSE33365) [Oligo Array] Duke Taeniopygia guttata 45K (GPL9856) Duke University 2011-11-01 Taeniopygia guttata
Taeniopygia guttata		 7,644,730
(44,969 x 170) 		170 by_platform
by_series
9 Identification and functional impact of genomic copy number variants in zebrafish, an important human disease model (Zebrafish Strain CNVs) (CGH ZV81M) (GSE28276) [Oligo Array] Agilent-026161 ZV81M (GPL13352) Brigham and Women's Hospital/Harvard Medical School 2011-03-30 Danio rerio
Danio rerio		 6,818,112
(974,016 x 7) 		7 by_platform
by_series
10 A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns (GSE24616) [Oligo Array] Agilent-019161 D. rerio (Zebrafish) Oligo Microarray (V2) G2519F (Feature Number version) (GPL6457) Max-Planck-Institute for evolutinonary biology 2010-10-11 Danio rerio
Danio rerio		 6,647,340
(45,220 x 147) 		2 23 122 by_platform
by_series
11 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation (GSE19413) [Oligo Array] NimbleGen Xenopus tropicalis Dedicated Promoter v1.0 (GPL9785) Radboud University 2009-12-10 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 5,854,017
(1,951,339 x 3) 		3 by_platform
by_series
12 Nutrigenomics study in Atlantic salmon (Salmo salar) fed novel diets supplemented with marine by-products (GSE41325) [Oligo Array] Agilent-025055 Koop Lab Salmonid 44k (GPL11299) Fisheries & Oceans Canada 2012-10-03 Salmo salar
Salmo salar		 5,242,680
(43,689 x 120) 		120 by_platform
by_series
13 Discovery and validation of gene classifiers for endocrine disrupting chemicals in Zebrafish (Danio rerio) (GSE38070) [Oligo Array] Agilent-015064 D. rerio (Zebrafish) Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7302) US EPA 2012-05-21 Danio rerio
Danio rerio		 4,982,670
(21,570 x 231) 		50 160 21 by_platform
by_series
14 Expression analysis of zebrafish TIF1g-deficient, cdc73 deficient and double-deficient embryos (GSE20432) [Oligo Array] Children's Hospital Boston Danio rerio 385K Array [071105_Zv7] (GPL10076) Children's Hospital Boston 2010-02-19 Danio rerio
Danio rerio		 4,620,000
(385,000 x 12) 		12 by_platform
by_series
15 Chromatin signature of embryonic pluripotency is established during zygotic genome activation [Danio rerio] (GSE20023) [Tiling Array] NimbleGen Danio rerio 385K Zv7 tiling array (GPL9970) Tongji University 2010-01-25 Danio rerio
Danio rerio		 4,207,284
(350,607 x 12) 		12 by_platform
by_series
16 Transcriptional response of Atlantic salmon (Salmo salar) after primary versus secondary exposure to Infectious Salmon Anemia Virus (ISAV) (GSE28357) [Oligo Array] Agilent-020938 S. salar (Salmon) Oligo Microarray (Probe Name version) (GPL7303) Fisheries & Oceans Canada 2011-04-04 Salmo salar
Salmo salar		 4,147,985
(43,663 x 95) 		95 by_platform
by_series
17 Analysis of severe feather pecking behavior in a high feather pecking selection line (GSE10380) [Oligo Array] ARK-Genomics G. gallus 20K v1.0 (GPL5480) Aarhus University, Faculty of Agricultural Sciences 2008-02-05 Gallus gallus
Gallus gallus		 3,969,504
(22,176 x 179) 		179 by_platform
by_series
18 An initial map of chromosomal segmental copy number variations in chickens (GSE19469) [Tiling Array] NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH (GPL9799) Tennessee State University 2009-12-14 Gallus gallus
Gallus gallus		 3,850,020
(385,002 x 10) 		10 by_platform
by_series
19 Comparative Transcriptional Profiling of the Axolotl Limb Identifies a Tripartite Regeneration-Specific Gene Program (GSE36451) [Oligo Array] Agilent-019788 Ambystoma mexicanum 44k_v3_20080327 [ProbeName version] (GPL15342) DFG-Center for Regenerative Therapies Dresden 2012-03-12 Ambystoma mexicanum
Ambystoma mexicanum		 3,503,760
(43,797 x 80) 		80 by_platform
by_series
20 Zebrafish Paired End DiTag libraries (GSE6694) [Other] Zebrafish Paired End DiTags (GPL4737) Genome Institute Of Singapore 2007-01-09 Danio rerio
Danio rerio		 3,318,370
(663,674 x 5) 		1 1 1 1 1 by_platform
by_series
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