| 1 |
GPL10835 |
090313_Zv7_PC_ChIP_HX1 |
2,168,225 |
University of Oslo |
2010-08-18 |
NimbleGen |
Danio rerio
 |
Tiling Array |
in situ oligonucleotide, 090313_Zv7_PC_ChIP_HX1, Sanger Zv7 assembly Tiling of TSS (15kb upstream, 5kb downstream) native array description file: 090313_Zv7_PC_ChIP_HX1.ndf native array description file: 090313_Zv7_PC_ChIP_HX1.pos |
| 2 |
GPL9778 |
NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 1 |
2,160,000 |
Radboud University |
2009-12-10 |
NimbleGen |
Xenopus (Silurana) tropicalis
 |
Tiling Array |
in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 1, JGI 4.1 (UCSC xenTro2) |
| 3 |
GPL9779 |
NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 2 |
2,160,000 |
Radboud University |
2009-12-10 |
NimbleGen |
Xenopus (Silurana) tropicalis
|
Tiling Array |
in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 2, JGI 4.1 (UCSC xenTro2) |
| 4 |
GPL9780 |
NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 3 |
2,160,000 |
Radboud University |
2009-12-10 |
NimbleGen |
Xenopus (Silurana) tropicalis
|
Tiling Array |
in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 3, JGI 4.1 (UCSC xenTro2) |
| 5 |
GPL9781 |
NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 4 |
2,160,000 |
Radboud University |
2009-12-10 |
NimbleGen |
Xenopus (Silurana) tropicalis
|
Tiling Array |
in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 4, JGI 4.1 (UCSC xenTro2) |
| 6 |
GPL9785 |
NimbleGen Xenopus tropicalis Dedicated Promoter v1.0 |
1,951,339 |
Radboud University |
2009-12-10 |
NimbleGen |
Xenopus (Silurana) tropicalis
|
Oligo Array |
in situ oligonucleotide, NimbleGen Xenopus tropicalis Dedicated Promoter v1.0, JGI 4.1 (UCSC xenTro2) |
| 7 |
GPL13352 |
Agilent-026161 ZV81M |
974,016 |
Brigham and Women's Hospital/Harvard Medical School |
2011-03-30 |
Agilent Technologies |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Agilent-026161 ZV81M, ZV8 1M Arrays of this design have barcodes that begin with 16026161 or 2526161. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 8 |
GPL9782 |
NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5a |
720,000 |
Radboud University |
2009-12-10 |
NimbleGen |
Xenopus (Silurana) tropicalis
|
Tiling Array |
in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5a, JGI 4.1 (UCSC xenTro2) |
| 9 |
GPL9783 |
NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5b |
720,000 |
Radboud University |
2009-12-10 |
NimbleGen |
Xenopus (Silurana) tropicalis
|
Tiling Array |
in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5b, JGI 4.1 (UCSC xenTro2) |
| 10 |
GPL4737 |
Zebrafish Paired End DiTags |
663,674 |
Genome Institute Of Singapore |
2007-01-09 |
not applicable |
Danio rerio
|
Other |
other, Zebrafish Paired End DiTags, Paired End DiTags (PET) derived from 5 Zebrafish libraries. Used a DNA tag sequencing and mapping strategy called gene identification signature (GIS) analysis, in which 5' and 3' signatures of full-length cDNAs are accurately extracted into paired-end ditags (PETs) that are concatenated for efficient sequencing and mapped to genome sequences to demarcate the transcription boundaries of every gene. GIS analysis is potentially 30-fold more efficient than standard cDNA sequencing approaches for transcriptome characterization. Mappings based on Genome Build: Zv6 (March 2006) |
| 11 |
GPL6541 |
CSIRO-Chicken-Solexa sequencing-embryo miRNA |
608,750 |
University of Queensland |
2008-03-02 |
Illumina/Solexa, USA |
Gallus gallus
 |
HT Sequencing |
other, CSIRO-Chicken-Solexa sequencing-embryo miRNA, |
| 12 |
GPL13398 |
Agilent chicken CGH array |
420,288 |
China Agricultural University |
2011-04-11 |
Agilent |
Gallus gallus
|
Oligo Array |
in situ oligonucleotide, Agilent chicken CGH array, Agilent design ID 031112. Platform is based on chicken genome build WUGSC 2.1/galGal3. |
| 13 |
GPL5746 |
Nimblegen 2007 Danio rerio Gene Expression Array |
392,778 |
Albert Einstein College of Medicine |
2007-08-15 |
Nimblegen |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Nimblegen 2007 Danio rerio Gene Expression Array, Expression design for Danio rerio from ZGI release 16. Selected 9 probes per target for 43422 targets (33752 EST entries, with some represented on both strands). Several hundred targets have less than 9 probes with many as low as one probe per target. There are 1,347 targets for which we cannot select any probes. |
| 14 |
GPL5783 |
Nimblegen 2006 Danio rerio Gene Expression Array |
392,750 |
Albert Einstein College of Medicine |
2007-08-28 |
Nimblegen |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Nimblegen 2006 Danio rerio Gene Expression Array, Expression design for Danio rerio from ZGI release 16. Selected 9 probes per target for 43422 targets (33752 EST entries, with some represented on both strands). Several hundred targets have less than 9 probes with many as low as one probe per target. There are 1,347 targets for which we cannot select any probes. |
| 15 |
GPL9799 |
NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH |
385,002 |
Tennessee State University |
2009-12-14 |
NimbleGen |
Gallus gallus
|
Tiling Array |
in situ oligonucleotide, NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH, UCSC May 2006 chicken (Gallus gallus) v2.1 draft assembly |
| 16 |
GPL10076 |
Children's Hospital Boston Danio rerio 385K Array [071105_Zv7] |
385,000 |
Children's Hospital Boston |
2010-02-19 |
Nimblegen |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Children's Hospital Boston Danio rerio 385K Array [071105_Zv7], 071105_Zv7_EXPR |
| 17 |
GPL9970 |
NimbleGen Danio rerio 385K Zv7 tiling array |
350,607 |
Tongji University |
2010-01-25 |
Nimblegen |
Danio rerio
|
Tiling Array |
in situ oligonucleotide, NimbleGen Danio rerio 385K Zv7 tiling array, UCSC zebrafish genome sequence Zv7 385K 50mer probes were printed and were spaced by 30 bp resulting in 80 bp resolution. Tiled regions include specifically selected genes (i.e. maternally provided genes, genes that are transcribed at zygotic genome activation, important developmental genes and known late genes) as well as two large contiguous genomic regions on linkage groups 3 and 11. The .ndf and .pos files are linked below as supplementary files. |
| 18 |
GPL7207 |
Hubrecht Institute Zebrafish Zili- and Ziwi-interacting small RNAs (454 GS FLX system) |
249,524 |
Hubrecht Institute |
2008-08-26 |
Hubrecht Institute |
Danio rerio
|
HT Sequencing |
MPSS, Hubrecht Institute Zebrafish Zili- and Ziwi-interacting small RNAs (454 GS FLX system), |
| 19 |
GPL11041 |
Agilent-019553 Gallus gallus (chicken) Genome CGH Microarray 244K(Feature Number version) |
243,504 |
Agilent Technologies |
2010-10-12 |
Agilent Technologies |
Gallus gallus
|
Oligo Array |
in situ oligonucleotide, Agilent-019553 Gallus gallus (chicken) Genome CGH Microarray 244K(Feature Number version), Gallus gallus (chicken) Genome CGH Microarray 244K Design ID: 019553 Control Grid: IS-243504-1-V1_244K_CGH_Gga_20080227 Arrays of this design have barcodes that begin with 16019553 or 2519553. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL15501. |
| 20 |
GPL15501 |
Agilent-019553 Gallus gallus (chicken) Genome CGH Microarray 244K (Probe Name version) |
239,311 |
Agilent Technologies |
2012-04-30 |
Agilent Technologies |
Gallus gallus
|
Oligo Array |
in situ oligonucleotide, Agilent-019553 Gallus gallus (chicken) Genome CGH Microarray 244K (Probe Name version), *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL11041. |