Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(124)		   Primates
(2)		   Rodents
(90)		   Mammals
(10)		   Vertebrates
(19)		   Invertebrates
(37)		   Plants
(65)		   Bacteria
(66)		   Viruses
(17)		   Phages
(0)		   Unclassified
(14)		   All
(446)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(8)		   cDNA Array
(1)		   Oligo Array
(4)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(1)		   HT-Seq
(5)		   Other
(0)		   All
(19)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9778 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 1 2,160,000 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 1, JGI 4.1 (UCSC xenTro2)
2 GPL9779 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 2 2,160,000 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 2, JGI 4.1 (UCSC xenTro2)
3 GPL9780 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 3 2,160,000 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 3, JGI 4.1 (UCSC xenTro2)
4 GPL9781 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 4 2,160,000 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 4, JGI 4.1 (UCSC xenTro2)
5 GPL9785 NimbleGen Xenopus tropicalis Dedicated Promoter v1.0 1,951,339 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Oligo Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Dedicated Promoter v1.0, JGI 4.1 (UCSC xenTro2)
6 GPL9782 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5a 720,000 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5a, JGI 4.1 (UCSC xenTro2)
7 GPL9783 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5b 720,000 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5b, JGI 4.1 (UCSC xenTro2)
8 GPL9799 NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH 385,002 Tennessee State University 2009-12-14 NimbleGen Gallus gallus
Gallus gallus		 Tiling Array in situ oligonucleotide, NimbleGen 385k whole genome tiling 2006-07-12_galGal3_WG_CGH, UCSC May 2006 chicken (Gallus gallus) v2.1 draft assembly
9 GPL9784 NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5c 191,446 Radboud University 2009-12-10 NimbleGen Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Tiling Array in situ oligonucleotide, NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5c, JGI 4.1 (UCSC xenTro2)
10 GPL9663 University of Padova_Dicentrarchus labrax_4x44K array_v1.0 39,487 University of Padova 2009-11-12 Agilent Technologies Dicentrarchus labrax
Dicentrarchus labrax		 Oligo Array in situ oligonucleotide, University of Padova_Dicentrarchus labrax_4x44K array_v1.0, GE 4x44k oligo microarray that covers 19,035 unique transcripts of the European sea bass (Dicentrarchus labrax). Oligonucleotides, 60-mer plus a “linker”, are synthesized directly on glass slide using the Agilent’s SurePrint Tecnology ; oligo design was carried out by eArray and two non overlapping probes were designed for each ESTs cluster. Both independent probes designed for the same transcript are named with an univocal ID and distinguished by suffix _1 or _2. Sequence and description of each gene (cluster) are available in the DLPD database (http://enne.cribi.unipd.it:5556/biomart/martview), where cluster ID corresponds to probe ID on the array.
11 GPL9554 Songbird Neurogenomics Initiative 20K Array 20,160 University of Illinois 2009-11-10 University of Illinois, Functional Genomics Lab Taeniopygia guttata
Taeniopygia guttata		 cDNA Array spotted DNA/cDNA, Songbird Neurogenomics Initiative 20K Array,
12 GPL9548 Agilent-018586 Bobwhite Quail 15K Microarray 14,968 University of Southern Mississippi 2009-11-09 Agilent Technologies Colinus virginianus
Colinus virginianus		 Oligo Array in situ oligonucleotide, Agilent-018586 Bobwhite Quail 15K Microarray,
13 GPL9788 Turkey skeletal muscle long oligonucleotide (TSKMLO) microarray 12,288 Michigan State University 2009-12-11 Oligonucleotide design and synthesis: Invitrogen (Carlsbad, CA); Array printing: Michigan State University Research Technology Support Facility (East Lansing, MI) Meleagris gallopavo
Meleagris gallopavo		 Oligo Array spotted oligonucleotide, Turkey skeletal muscle long oligonucleotide (TSKMLO) microarray,
14 GPL9804 JCOLL Zebrafish 189 qRT-PCR v1.0 189 INIA 2009-12-15 Applied Biosystems Danio rerio
Danio rerio		 RT-PCR RT-PCR, JCOLL Zebrafish 189 qRT-PCR v1.0,
15 GPL9385 Illumina Genome Analyzer II (Gallus gallus) 0 2009-10-07 Gallus gallus
Gallus gallus		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Gallus gallus),
16 GPL9405 Illumina Genome Analyzer (Xenopus (Silurana) tropicalis) 0 2009-10-08 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Xenopus (Silurana) tropicalis),
17 GPL9406 454 GS FLX (Xenopus (Silurana) tropicalis) 0 2009-10-08 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 HT Sequencing high-throughput sequencing, 454 GS FLX (Xenopus (Silurana) tropicalis),
18 GPL9407 454 GS FLX (Xenopus laevis) 0 2009-10-08 Xenopus laevis
Xenopus laevis		 HT Sequencing high-throughput sequencing, 454 GS FLX (Xenopus laevis),
19 GPL9408 Illumina Genome Analyzer II (Xenopus laevis) 0 2009-10-08 Xenopus laevis
Xenopus laevis		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Xenopus laevis),
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