Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(806)		   Primates
(10)		   Rodents
(554)		   Mammals
(32)		   Vertebrates
(48)		   Invertebrates
(182)		   Plants
(225)		   Bacteria
(109)		   Viruses
(2)		   Phages
(0)		   Unclassified
(5)		   All
(1,980)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(4)		   Tiling Array
(1)		   cDNA Array
(3)		   Oligo Array
(33)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(6)		   Other
(0)		   All
(48)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Identification and functional impact of genomic copy number variants in zebrafish, an important human disease model (Zebrafish Strain CNVs) (CGH ZV81M 2) (GSE28278) [Oligo Array] Agilent-026161 ZV81M (GPL13352) Brigham and Women's Hospital/Harvard Medical School 2011-03-30 Danio rerio
Danio rerio		 74,025,216
(974,016 x 76) 		76 by_platform
by_series
2 Marking of the genome by H3K4 methylation prior to embryonic gene activation (GSE27314) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2011-02-14 Danio rerio
Danio rerio		 54,205,625
(2,168,225 x 25) 		25 by_platform
by_series
3 Identification and functional impact of genomic copy number variants in zebrafish, an important human disease model (Zebrafish Strain CNVs) (CGH ZV81M) (GSE28276) [Oligo Array] Agilent-026161 ZV81M (GPL13352) Brigham and Women's Hospital/Harvard Medical School 2011-03-30 Danio rerio
Danio rerio		 6,818,112
(974,016 x 7) 		7 by_platform
by_series
4 Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm (GSE26609) [Oligo Array] Zebrafish 12kb promoter 244K array_slide 2 of 2 (GPL6601) University of Utah 2011-01-13 Danio rerio
Danio rerio		 3,183,174
(176,843 x 18) 		16 2 by_platform
by_series
5 Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm (GSE26609) [Oligo Array] Zebrafish 12kb promoter 244K array_slide 1 of 2 (GPL6600) University of Utah 2011-01-13 Danio rerio
Danio rerio		 3,163,428
(175,746 x 18) 		16 2 by_platform
by_series
6 Mapping gene expression in two Xenopus: evolutionary constraints and developmental flexibility (GSE27227) [Oligo Array] Xenopus laevis Custom Microarray (GPL13127) Technion - Israel Institute of Technology 2011-02-10 Xenopus laevis
Xenopus laevis		 2,102,544
(43,803 x 48) 		48 by_platform
by_series
7 Mapping gene expression in two Xenopus: evolutionary constraints and developmental flexibility (GSE27227) [Oligo Array] Xenopus tropicalis Custom Microarray (GPL13126) Technion - Israel Institute of Technology 2011-02-10 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 2,102,544
(43,803 x 48) 		48 by_platform
by_series
8 Transcriptional Response of Zebrafish Embryos Exposed to Neurotoxic Compounds Reveals a Muscle Activity Dependent hspb11 Expression (GSE27680) [Oligo Array] Agilent-015064 D. rerio (Zebrafish) Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6563) UFZ Helmholtz Centre for Environmental Research 2011-03-04 Danio rerio
Danio rerio		 1,447,040
(45,220 x 32) 		32 by_platform
by_series
9 Differentiating size-dependent responses of juvenile pink salmon (Oncorhynchus gorbuscha) to sea lice (Lepeophtheirus salmonis) infections (GSE27528) [cDNA Array] cGRASP Salmonid array, 32K cDNA, version 2, 02/08 (GPL13225) The University of Victoria 2011-02-25 Oncorhynchus gorbuscha
Oncorhynchus gorbuscha		 1,213,056
(33,696 x 36) 		36 by_platform
by_series
10 The impact of chronic temperature elevation on the spleen anti-viral transcriptomic response in Atlantic cod (Gadus morhua) (GSE27299) [Oligo Array] CGP Atlantic cod 20K oligo array v1.0 (GPL10532) Memorial University of Newfoundland 2011-02-14 Gadus morhua
Gadus morhua		 1,200,000
(20,000 x 60) 		60 by_platform
by_series
11 Comparison of genomic, morphological, and behavioral responses among fathead minnow (Pimephales promelas ) and zebrafish (Danio rerio) to acute RDX exposure (GSE27067) [Oligo Array] Agilent-019161 D. rerio (Zebrafish) Oligo Microarray (V2) G2519F (Probe Name version) (GPL7301) US Army Engineer Research and Development Center 2011-02-04 Danio rerio
Danio rerio		 1,048,248
(43,677 x 24) 		24 by_platform
by_series
12 Neurotoxicogenomic investigations to assess mechanisms of action of the munitions constituents RDX and 2,6-DNT in Northern bobwhite (Colinus virginianus) (GSE27653) [cDNA Array] US Army Northern bobwhite (Colinus virginianus) custom brain tissue cDNA microarray (GPL14917) US Army ERDC 2011-03-02 Colinus virginianus
Colinus virginianus		 1,013,760
(9,216 x 110) 		110 by_platform
by_series
13 Effects of the total replacement of fish meal and fish oil with plant protein and oil sources on the hepatic transcriptome of two European sea bass (Dicentrarchus labrax) sub-families exhibiting different growth potentials on an all plant-based diet (GSE27649) [Oligo Array] University of Padova_Dicentrarchus labrax_4x44K array_v1.0 (GPL9663) Ifremer 2011-03-02 Dicentrarchus labrax
Dicentrarchus labrax		 947,688
(39,487 x 24) 		24 by_platform
by_series
14 Zebrafish hdac1 mutant and morphant embryos (GSE26710) [Oligo Array] LU/IBL_D.rerio_44k_015747 (GPL7735) University of Sheffield 2011-01-19 Danio rerio
Danio rerio		 910,770
(43,370 x 21) 		13 8 by_platform
by_series
15 Responses to ectoparasite salmon louse (Lepeophtheirus salmonis) in skin of Atlantic salmon (GSE26981) [Oligo Array] Agilent Salmon Immunity and Quality 44k custom array_SIQ3 (GPL10705) Akvaforsk 2011-01-31 Salmo salar
Salmo salar		 904,400
(45,220 x 20) 		20 by_platform
by_series
16 Responses to ectoparasite salmon louse (Lepeophtheirus salmonis) in spleen of Atlantic salmon (GSE26984) [Oligo Array] Agilent Salmon Immunity and Quality 44k custom array_SIQ4 (GPL10706) Akvaforsk 2011-01-31 Salmo salar
Salmo salar		 904,400
(45,220 x 20) 		20 by_platform
by_series
17 Responses to ectoparasite salmon louse (Lepeophtheirus salmonis) in Atlantic salmon (GSE27013) [Oligo Array] Agilent Salmon Immunity and Quality 44k custom array_SIQ3 (GPL10705) Akvaforsk 2011-02-02 Salmo salar
Salmo salar		 904,400
(45,220 x 20) 		20 by_platform
by_series
18 Responses to ectoparasite salmon louse (Lepeophtheirus salmonis) in Atlantic salmon (GSE27013) [Oligo Array] Agilent Salmon Immunity and Quality 44k custom array_SIQ4 (GPL10706) Akvaforsk 2011-02-02 Salmo salar
Salmo salar		 904,400
(45,220 x 20) 		20 by_platform
by_series
19 Gene expression in three different chicken lines after Salmonella infection early in life (GSE27069) [Oligo Array] ARK-Genomics G. gallus 20K v1.0 (GPL5480) Wageningen UR 2011-02-04 Gallus gallus
Gallus gallus		 842,688
(22,176 x 38) 		38 by_platform
by_series
20 Genome expression profile of early response to photobacteriosis in gilthead sea bream (Sparus aurata) (GSE26651) [Oligo Array] University of Padova_Sparus aurata_4x44K_v2.0 (GPL11489) University of Padova 2011-01-15 Sparus aurata
Sparus aurata		 705,088
(44,068 x 16) 		16 by_platform
by_series
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