Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(7)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(265)
  Tiling Array
(14)
  cDNA Array
(268)
  Oligo Array
(606)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(2)
  HT-Seq
(198)
  Other
(1)
  All
(1,364)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Distinct expression pattern of miRNAs in Marek’s disease virus infected-chicken splenic tumors and non-tumorous spleen tissues (GSE56364) [Oligo Array] LC Sciences Chicken miRNA Array (GPL18504) Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences 2014-03-31 Gallus gallus
Gallus gallus
2,595
(865 x 3)
3 by_platform
by_series
2 High-resolution analysis of gene activity during the Xenopus mid-blastula transition (GSE56242) [HT Sequencing] Illumina HiSeq 2500 (Xenopus (Silurana) tropicalis) (GPL18470) MRC National Institute for Medical Research 2014-03-26 Xenopus (Silurana) tropicalis
Xenopus tropicalis
28
(0 x 28)
28 by_platform
by_series
3 Agilent custom zebra finch microarray (GSE56075) [Oligo Array] Agilent-021323 Zebra Finch AgilentSongbird2 Oligoarray (GPL18442) Hokkaido University 2014-03-20 Taeniopygia guttata
Taeniopygia guttata
1,618,884
(44,969 x 36)
36 by_platform
by_series
4 Profiling hepatic microRNAs in zebrafish: Fluoxetine exposure mimics a fasting response that targets AMP-activated protein kinase (AMPK) (GSE55229) [Oligo Array] Agilent-043253 Danio rerio miRNA array [miRNA version] (GPL17636) University of Ottawa 2014-02-20 Danio rerio
Danio rerio
4,320
(270 x 16)
16 by_platform
by_series
5 Effects of antagonist of retinoid X receptor (UVI3003) on morphology and gene profile of Xenopus tropicalis embryos (GSE54929) [GeneChip] [X_tropicalis] Affymetrix Xenopus tropicalis Genome Array (GPL10263) East China Normal University 2014-02-12 Xenopus (Silurana) tropicalis
Xenopus tropicalis
1,416,504
(59,021 x 24)
24 by_platform
by_series
6 Differential gene expression in 2 days old zebrafish after glucocerebrosidase (GBA1) morpholino-mediated knockdown (GSE54754) [Oligo Array] Agilent-015064 D. rerio (Zebrafish) Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6563) University of Padova 2014-02-06 Danio rerio
Danio rerio
361,760
(45,220 x 8)
8 by_platform
by_series
7 Evolution of monoclonal zebrafish Myc-induced T-ALL, assessed by copy number variant analysis (GSE54482) [Oligo Array] Agilent-025355 Danio rerio ZV8400K (GPL18231) Massachusetts General Hospital 2014-01-28 Danio rerio
Danio rerio
18,072,384
(420,288 x 43)
42 1 by_platform
by_series
8 Genome-wide analysis of gene expression and intron retention during development in a U12-type splicing-deficient zebrafish mutant (GSE53935) [HT Sequencing] AB SOLiD System 3.0 (Danio rerio) (GPL10658) Walter and Eliza Hall Institute of Medical Research 2014-01-09 Danio rerio
Danio rerio
2
(0 x 2)
2 by_platform
by_series
9 Cardiac responses to elevated seawater temperature in Atlantic salmon (GSE53908) [cDNA Array] UKU_trout_1.8K_v1 (GPL6154) Nofima AS 2014-01-08 Salmo salar
Salmo salar
22,464
(11,232 x 2)
2 by_platform
by_series
10 Analysis of the mRNA Targetome of MicroRNAs Expressed by Marek’s Disease Virus (GSE53806) [HT Sequencing] Illumina HiSeq 2000 (Gallus gallus) (GPL16133) Duke university 2014-01-03 Gallus gallus
Gallus gallus
1
(0 x 1)
1 by_platform
by_series
11 Genome-wide analysis of gene expression and intron retention during development in a U12-type splicing-deficient zebrafish mutant [RNA-seq] (GSE53758) [HT Sequencing] AB SOLiD System 3.0 (Danio rerio) (GPL10658) Walter and Eliza Hall Institute of Medical Research 2014-01-02 Danio rerio
Danio rerio
2
(0 x 2)
2 by_platform
by_series
12 Pax3 and Zic1 trigger the early neural crest gene regulatory network by the direct activation of multiple key neural crest specifiers [X_laevis_2] (GSE53677) [GeneChip] [X_laevis_2] Affymetrix Xenopus laevis Genome 2.0 Array (GPL10756) Institut Curie 2013-12-27 Xenopus laevis
Xenopus laevis
522,160
(32,635 x 16)
16 by_platform
by_series
13 Pax3 and Zic1 trigger the early neural crest gene regulatory network by the direct activation of multiple key neural crest specifiers (GSE53679) [GeneChip] [X_laevis_2] Affymetrix Xenopus laevis Genome 2.0 Array (GPL10756) Institut Curie 2013-12-27 Xenopus laevis
Xenopus laevis
522,160
(32,635 x 16)
16 by_platform
by_series
14 Pax3 and Zic1 trigger the early neural crest gene regulatory network by the direct activation of multiple key neural crest specifiers [Xenopus_laevis] (GSE53678) [GeneChip] [Xenopus_laevis] Affymetrix Xenopus laevis Genome Array (GPL1318) Institut Curie 2013-12-27 Xenopus laevis
Xenopus laevis
171,721
(15,611 x 11)
10 1 by_platform
by_series
15 Pax3 and Zic1 trigger the early neural crest gene regulatory network by the direct activation of multiple key neural crest specifiers (GSE53679) [GeneChip] [Xenopus_laevis] Affymetrix Xenopus laevis Genome Array (GPL1318) Institut Curie 2013-12-27 Xenopus laevis
Xenopus laevis
171,721
(15,611 x 11)
10 1 by_platform
by_series
16 Transcriptomic analyses of Kras induced zebrafish liver cancer (GSE53630) [HT Sequencing] AB SOLiD 3 Plus System (Danio rerio) (GPL16034) National University of Singapore 2013-12-24 Danio rerio
Danio rerio
4
(0 x 4)
4 by_platform
by_series
17 Transcriptomic analyses of Myc and xmrk induced zebrafish liver cancer (GSE53342) [HT Sequencing] AB SOLiD System 3.0 (Danio rerio) (GPL10658) National University of Singapore 2013-12-16 Danio rerio
Danio rerio
6
(0 x 6)
6 by_platform
by_series
18 Transcriptome analysis of alternative splicing events regulated by SRSF10 reveals position-dependent splicing modulation. (GSE53354) [HT Sequencing] Illumina HiSeq 2000 (Gallus gallus) (GPL16133) Institute for Nutritional Sciences, Chinese Academy of Sciences 2013-12-16 Gallus gallus
Gallus gallus
2
(0 x 2)
2 by_platform
by_series
19 Silencing of odorant receptor gene expression by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron (GSE53334) [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) University of California, Berkeley 2013-12-15 Danio rerio
Danio rerio
6
(0 x 6)
6 by_platform
by_series
20 Effect of light on gene expression in the zebrafish pineal gland (GSE53288) [GeneChip] [Zebrafish] Affymetrix Zebrafish Genome Array (GPL1319) Tel Aviv University 2013-12-13 Danio rerio
Danio rerio
187,404
(15,617 x 12)
12 by_platform
by_series
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