Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)
  Primates
(37)
  Rodents
(1,748)
  Mammals
(295)
  Vertebrates
(402)
  Invertebrates
(1,004)
  Plants
(2,170)
  Bacteria
(1,636)
  Viruses
(78)
  Phages
(8)
  Unclassified
(399)
  All
(11,528)
 
  SAGE NlaIII
(9)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(77)
  Oligo Array
(224)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(402)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16933 [ZebGene-1_0-st] Zebrafish Gene 1.0 ST Array [transcript (gene) version] 75,212 Affymetrix Japan 2013-03-29 Affymetrix Danio rerio
Danio rerio
GeneChip in situ oligonucleotide, [ZebGene-1_0-st] Zebrafish Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Jan 29, 2013: annotation table updated with netaffx build 33
2 GPL16932 Illumina Genome Analyzer II (Salmo trutta) 0 2013-03-29 Salmo trutta
Salmo trutta
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Salmo trutta),
3 GPL16819 Agilent-028639 RTIQ Oncorhynchus mykiss 45,220 Akvaforsk 2013-03-19 Agilent Technologies Oncorhynchus mykiss
Oncorhynchus mykiss
Oligo Array in situ oligonucleotide, Agilent-028639 RTIQ Oncorhynchus mykiss, rainbow trout chip Arrays of this design have barcodes that begin with 16028639 or 2528639. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
4 GPL16788 [FinGene-1_0-st] Zebra Finch Gene 1.0 ST Array [transcript (gene) version] 28,296 Affymetrix Japan 2013-03-14 Affymetrix Taeniopygia guttata
Taeniopygia guttata
GeneChip in situ oligonucleotide, [FinGene-1_0-st] Zebra Finch Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Thu Oct 20 14:39:28 PDT 2011 #%chip_type=FinGene-1_0-st-v1 #%lib_set_name=FinGene-1_0-st #%lib_set_version=v1 #%genome-species=Taeniopygia guttata #%genome-version=taeGut1 #%genome-version-create_date=2008-07-00 #%annotation-version=design-time
5 GPL16784 Agilent-039889 MosFish_array 15,744 University of Florida 2013-03-13 Agilent Technologies Gambusia holbrooki
Gambusia holbrooki
Oligo Array in situ oligonucleotide, Agilent-039889 MosFish_array, Arrays of this design have barcodes that begin with 16039889 or 2539889. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
6 GPL16775 Agilent Eel SSA microarray V1.0 45,220 University of Stirling 2013-03-11 Agilent Technologies Anguilla anguilla
Anguilla anguilla
Oligo Array in situ oligonucleotide, Agilent Eel SSA microarray V1.0,
7 GPL16776 Agilent TurbotV2_SSFN microarray2013 42,065 University of Stirling 2013-03-11 Agilent Technologies Psetta maxima
Psetta maxima
Oligo Array in situ oligonucleotide, Agilent TurbotV2_SSFN microarray2013,
8 GPL16767 Agilent Seabass SS microarray V2.0 43,803 Autonomous University of Barcelona 2013-03-08 Agilent Technologies Dicentrarchus labrax
Dicentrarchus labrax
Oligo Array in situ oligonucleotide, Agilent Seabass SS microarray V2.0,
9 GPL16735 Illumina HiSeq 2000 (Pseudopodoces humilis) 0 2013-03-01 Pseudopodoces humilis
Pseudopodoces humilis
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Pseudopodoces humilis),
10 GPL16555 Agilent-030860 Salmon Immunity and Quality 15k custom array_SIQ6 15,377 NOFIMA marine 2013-01-28 Agilent Technologies Oncorhynchus mykiss,Salmo salar
Oncorhynchus mykiss,Salmo salar
Oligo Array in situ oligonucleotide, Agilent-030860 Salmon Immunity and Quality 15k custom array_SIQ6,
11 GPL16531 Illumina HiSeq 2000 (Monopterus albus) 0 2013-01-21 Monopterus albus
Monopterus albus
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Monopterus albus),
12 GPL16506 Illumina HiSeq 1000 (Gallus gallus) 0 2013-01-15 Gallus gallus
Gallus gallus
HT Sequencing high-throughput sequencing, Illumina HiSeq 1000 (Gallus gallus),
13 GPL16507 Illumina Genome Analyzer IIx (Anolis carolinensis) 0 2013-01-15 Anolis carolinensis
Anolis carolinensis
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Anolis carolinensis),
14 GPL16508 Illumina HiSeq 1000 (Xenopus (Silurana) tropicalis) 0 2013-01-15 Xenopus (Silurana) tropicalis
Xenopus tropicalis
HT Sequencing high-throughput sequencing, Illumina HiSeq 1000 (Xenopus (Silurana) tropicalis),
15 GPL16509 Illumina HiSeq 1000 (Danio rerio) 0 2013-01-15 Danio rerio
Danio rerio
HT Sequencing high-throughput sequencing, Illumina HiSeq 1000 (Danio rerio),
16 GPL16363 Agilent-029034 Morone saxatilis ST2010B [Probe Name version] 14,618 National Ocean Services 2012-12-07 Agilent Technologies Morone saxatilis
Morone saxatilis
Oligo Array in situ oligonucleotide, Agilent-029034 Morone saxatilis ST2010B [Probe Name version], Arrays of this design have barcodes that begin with 16029034 or 2529034. The "Contig" information is not available in a public database because they are referring to contig assemblies of ESTs that we assembled.
17 GPL16350 Illumina Genome Analyzer IIx (Oryzias melastigma) 0 2012-12-03 Oryzias melastigma
Oryzias melastigma
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Oryzias melastigma),
18 GPL16307 Agilent-017298 chicken Array (017298_D_20070718) 45,220 Iowa State University 2012-11-20 Agilent Technologies Gallus gallus
Gallus gallus
Oligo Array in situ oligonucleotide, Agilent-017298 chicken Array (017298_D_20070718),
19 GPL16276 University of Victoria/Caren Helbing Laboratory Frog MAGEX DNA array version 2008 1,476 University of Victoria 2012-11-14 Microarray Facility of The Prostate Centre at Vancouver General Hospital (Vancouver, BC, Canada) Xenopus laevis,Rana catesbeiana,Rana pipiens
Xenopus laevis,Rana catesbeiana,Rana pipiens
cDNA Array spotted DNA/cDNA, University of Victoria/Caren Helbing Laboratory Frog MAGEX DNA array version 2008,
20 GPL16266 Agilent-022364 Oryzias latipes array (Feature Number version) 15,207 Duke University 2012-11-09 Agilent Technologies Oryzias latipes
Oryzias latipes
Oligo Array in situ oligonucleotide, Agilent-022364 Oryzias latipes array (Feature Number version), Agilent-022364 Olat_15207genes_1208 array Grid_Name: 022364_D_F_20081216 Arrays of this design have barcodes that begin with 16022364 or 2522364. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
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