Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(836)
  Primates
(10)
  Rodents
(586)
  Mammals
(39)
  Vertebrates
(49)
  Invertebrates
(184)
  Plants
(231)
  Bacteria
(113)
  Viruses
(2)
  Phages
(0)
  Unclassified
(8)
  All
(2,065)
 
  SAGE NlaIII
(1)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(4)
  Tiling Array
(1)
  cDNA Array
(3)
  Oligo Array
(34)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(6)
  Other
(0)
  All
(49)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Identification and functional impact of genomic copy number variants in zebrafish, an important human disease model (Zebrafish Strain CNVs) (CGH ZV81M 2) (GSE28278) [Oligo Array] Agilent-026161 ZV81M (GPL13352) Brigham and Women's Hospital/Harvard Medical School 2011-03-30 Danio rerio
Danio rerio
74,025,216
(974,016 x 76)
76 by_platform
by_series
2 Identification and functional impact of genomic copy number variants in zebrafish, an important human disease model (Zebrafish Strain CNVs) (CGH ZV81M) (GSE28276) [Oligo Array] Agilent-026161 ZV81M (GPL13352) Brigham and Women's Hospital/Harvard Medical School 2011-03-30 Danio rerio
Danio rerio
6,818,112
(974,016 x 7)
7 by_platform
by_series
3 Identification and functional impact of genomic copy number variants in zebrafish, an important human disease model (Zebrafish Strain CNVs) (expression array) (GSE28239) [Oligo Array] Agilent-019161 D. rerio (Zebrafish) Oligo Microarray (V2) G2519F (Feature Number version) (GPL6457) Brigham and Women's Hospital/Harvard Medical School 2011-03-29 Danio rerio
Danio rerio
316,540
(45,220 x 7)
7 by_platform
by_series
4 prdm1a mutant vs. wild type (GSE28199) [GeneChip] [Zebrafish] Affymetrix Zebrafish Genome Array (GPL1319) University of Colorado Denver 2011-03-28 Danio rerio
Danio rerio
93,702
(15,617 x 6)
6 by_platform
by_series
5 mRNA-seq data of embryonic chicken digits (GSE28156) [HT Sequencing] Illumina Genome Analyzer (Gallus gallus) (GPL10223) Yale University 2011-03-24 Gallus gallus
Gallus gallus
16
(0 x 16)
16 by_platform
by_series
6 Expression Analysis of Trimethyltin Chlorides (TMT) Impact on Embryonic Development (GSE28131) [Oligo Array] NimbleGen Danio rerio 12x135K Arrays [090818_Zv7_EXPR] (GPL13318) Oregon State University 2011-03-23 Danio rerio
Danio rerio
461,880
(38,490 x 12)
12 by_platform
by_series
7 Diet study with EE2 in liver of female largemouth bass (LMB) (GSE28143) [Oligo Array] LMB microarray 15K (Agilent format) (GPL13229) University of Florida 2011-03-23 Micropterus salmoides
Micropterus salmoides
197,704
(15,208 x 13)
13 by_platform
by_series
8 Identification of long non-protein coding RNAs in chicken skeletal muscle by Solexa sequencing (GSE28080) [HT Sequencing] Illumina Genome Analyzer II (Gallus gallus) (GPL9385) Peking University 2011-03-22 Gallus gallus
Gallus gallus
1
(0 x 1)
1 by_platform
by_series
9 Nuclear Factor Kappa B is central to Marek’s Disease lymphomagenesis (GSE28034) [Oligo Array] Chicken 44K custom Agilent microarray (GPL4993) Texas A&M University 2011-03-18 Gallus gallus
Gallus gallus
168,136
(42,034 x 4)
4 by_platform
by_series
10 Identification of genes associated with lens regeneration from the cornea in Xenopus laevis tadpoles (GSE28014) [GeneChip] [Xenopus_laevis] Affymetrix Xenopus laevis Genome Array (GPL1318) University of Otago 2011-03-17 Xenopus laevis
Xenopus laevis
140,499
(15,611 x 9)
9 by_platform
by_series
11 Identification and differential expression of microRNAs during metamorphosis in the Japanese flounder (Paralichthys olivaceus) (GSE27986) [Oligo Array] SHOU miRNA Fishes 1K (GPL13286) Shanghai Ocean University 2011-03-16 Paralichthys olivaceus
Paralichthys olivaceus
1,974
(987 x 2)
2 by_platform
by_series
12 Expressed sequences and polymorphisms in rohu carp (Labeo rohita, Hamilton) revealed by mRNA-seq (GSE27994) [HT Sequencing] Illumina Genome Analyzer II (Labeo rohita) (GPL13291) Nofima Marin 2011-03-16 Labeo rohita
Labeo rohita
2
(0 x 2)
2 by_platform
by_series
13 Sexually dimorphic transcriptomic responses in the largemouth bass to the neuroactive pesticide dieldrin (GSE27963) [Oligo Array] LMB microarray 15K (Agilent format) (GPL13229) UF 2011-03-15 Micropterus salmoides
Micropterus salmoides
304,160
(15,208 x 20)
20 by_platform
by_series
14 Expression profile of Chicken Early Yolksac Endodermal Tissues (GSE27958) [GeneChip] [Chicken] Affymetrix Chicken Genome Array (GPL3213) Center for Developmental Biology, RIKEN 2011-03-14 Gallus gallus
Gallus gallus
308,280
(38,535 x 8)
8 by_platform
by_series
15 Genome-wide CTCF binding maps in chicken red blood cells (GSE27945) [HT Sequencing] Illumina Genome Analyzer (Gallus gallus) (GPL10223) CRG 2011-03-14 Gallus gallus
Gallus gallus
2
(0 x 2)
2 by_platform
by_series
16 Zebrafish: Estrogen induced gene expression (GSE27707) [Oligo Array] Zf_16.5K_oligo_COMP_v3Apx (GPL2715) Genome Institute of Singapore 2011-03-07 Danio rerio
Danio rerio
165,120
(16,512 x 10)
10 by_platform
by_series
17 Transcriptome-wide analysis of small RNA expression in early zebrafish development (GSE27722) [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) Vanderbilt University 2011-03-07 Danio rerio
Danio rerio
5
(0 x 5)
5 by_platform
by_series
18 Transcriptional Response of Zebrafish Embryos Exposed to Neurotoxic Compounds Reveals a Muscle Activity Dependent hspb11 Expression (GSE27680) [Oligo Array] Agilent-015064 D. rerio (Zebrafish) Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6563) UFZ Helmholtz Centre for Environmental Research 2011-03-04 Danio rerio
Danio rerio
1,447,040
(45,220 x 32)
32 by_platform
by_series
19 Neurotoxicogenomic investigations to assess mechanisms of action of the munitions constituents RDX and 2,6-DNT in Northern bobwhite (Colinus virginianus) (GSE27653) [cDNA Array] US Army Northern bobwhite (Colinus virginianus) custom brain tissue cDNA microarray (GPL14917) US Army ERDC 2011-03-02 Colinus virginianus
Colinus virginianus
1,013,760
(9,216 x 110)
110 by_platform
by_series
20 Effects of the total replacement of fish meal and fish oil with plant protein and oil sources on the hepatic transcriptome of two European sea bass (Dicentrarchus labrax) sub-families exhibiting different growth potentials on an all plant-based diet (GSE27649) [Oligo Array] University of Padova_Dicentrarchus labrax_4x44K array_v1.0 (GPL9663) Ifremer 2011-03-02 Dicentrarchus labrax
Dicentrarchus labrax
947,688
(39,487 x 24)
24 by_platform
by_series
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