Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(7)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(265)
  Tiling Array
(14)
  cDNA Array
(268)
  Oligo Array
(606)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(2)
  HT-Seq
(198)
  Other
(1)
  All
(1,364)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis (GSE28328) [Oligo Array] Agilent-026161 ZV81M (GPL13352) Brigham and Women's Hospital/Harvard Medical School 2011-04-01 Danio rerio
Danio rerio
83,765,376
(974,016 x 86)
86 by_platform
by_series
2 Identification and functional impact of genomic copy number variants in zebrafish, an important human disease model (Zebrafish Strain CNVs) (CGH ZV81M 2) (GSE28278) [Oligo Array] Agilent-026161 ZV81M (GPL13352) Brigham and Women's Hospital/Harvard Medical School 2011-03-30 Danio rerio
Danio rerio
74,025,216
(974,016 x 76)
76 by_platform
by_series
3 Marking of the genome by H3K4 methylation prior to embryonic gene activation (GSE27314) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2011-02-14 Danio rerio
Danio rerio
54,205,625
(2,168,225 x 25)
25 by_platform
by_series
4 Developmental features of DNA methylation during activation of the embryonic zebrafish genome (GSE33236) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2011-10-26 Danio rerio
Danio rerio
26,018,700
(2,168,225 x 12)
2 10 by_platform
by_series
5 Evolution of monoclonal zebrafish Myc-induced T-ALL, assessed by copy number variant analysis (GSE54482) [Oligo Array] Agilent-025355 Danio rerio ZV8400K (GPL18231) Massachusetts General Hospital 2014-01-28 Danio rerio
Danio rerio
18,072,384
(420,288 x 43)
42 1 by_platform
by_series
6 Large scale variation in copy number in chicken breeds (GSE47623) [Oligo Array] Agilent-019553 Gallus gallus (chicken) Genome CGH Microarray 244K (Probe Name version) (GPL15501) Wageningen University 2013-06-04 Gallus gallus
Gallus gallus
14,837,282
(239,311 x 62)
62 by_platform
by_series
7 The impact of experience-dependent and independent factors on gene expression in songbird brain (GSE36748) [cDNA Array] Songbird Neurogenomics Initiative 20K Array (GPL9554) University of Illinois 2012-03-23 Taeniopygia guttata,Sturnus vulgaris
Taeniopygia guttata,Sturnus vulgaris
9,838,080
(20,160 x 488)
488 by_platform
by_series
8 Mapping of H3K4 and H3K27 trimethylation in zebrafish cells (ChIP-chip) (GSE23691) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2010-08-18 Danio rerio
Danio rerio
8,672,900
(2,168,225 x 4)
4 by_platform
by_series
9 Mapping of H3K4 and H3K27 trimethylation in zebrafish cells (GSE23872) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2010-08-30 Danio rerio
Danio rerio
8,672,900
(2,168,225 x 4)
4 by_platform
by_series
10 Comparative transcriptomics of Atlantic Salmo salar, chum Onchorhynchus keta and pink salmon O. gorbuscha responding to salmon lice Lepeophtheirus salmonis infections (GSE48337) [Oligo Array] Agilent-025055 Koop Lab Salmonid 44k (GPL11299) The University of Victoria 2013-06-26 Oncorhynchus gorbuscha
Oncorhynchus gorbuscha
8,475,666
(43,689 x 194)
57 137 by_platform
by_series
11 The singing genome: Core and region enriched gene expression define behaviorally regulated gene networks (GSE33365) [Oligo Array] Duke Taeniopygia guttata 45K (GPL9856) Duke University 2011-11-01 Taeniopygia guttata
Taeniopygia guttata
7,644,730
(44,969 x 170)
170 by_platform
by_series
12 Identification and functional impact of genomic copy number variants in zebrafish, an important human disease model (Zebrafish Strain CNVs) (CGH ZV81M) (GSE28276) [Oligo Array] Agilent-026161 ZV81M (GPL13352) Brigham and Women's Hospital/Harvard Medical School 2011-03-30 Danio rerio
Danio rerio
6,818,112
(974,016 x 7)
7 by_platform
by_series
13 A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns (GSE24616) [Oligo Array] Agilent-019161 D. rerio (Zebrafish) Oligo Microarray (V2) G2519F (Feature Number version) (GPL6457) Ruder Boskovic Institute 2010-10-11 Danio rerio
Danio rerio
6,647,340
(45,220 x 147)
2 23 122 by_platform
by_series
14 Testosterone differentially affects expression in the hypothalamus and the ventromedial telencephalon (VmT) of Juncos; Potential for sexual conflict assessed via testosterone-mediated transcriptional changes in peripheral tissues of a songbird (GSE41076) [Oligo Array] NimbleGen_Junco hyemalis_Expression Array_12x135k_All Probes [DesignID 537583] (GPL14995) University of Notre Dame 2012-09-21 Junco hyemalis
Junco hyemalis
6,480,000
(135,000 x 48)
12 12 24 by_platform
by_series
15 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation (GSE19413) [Oligo Array] NimbleGen Xenopus tropicalis Dedicated Promoter v1.0 (GPL9785) Radboud University 2009-12-10 Xenopus (Silurana) tropicalis
Xenopus tropicalis
5,854,017
(1,951,339 x 3)
3 by_platform
by_series
16 Transcriptome analysis of Traf6 function in early zebrafish embryogenesis (GSE42856) [Oligo Array] LU/IBL_D.rerio_44k_015747 (GPL7735) AMC 2012-12-11 Danio rerio
Danio rerio
5,291,140
(43,370 x 122)
122 by_platform
by_series
17 Nutrigenomics study in Atlantic salmon (Salmo salar) fed novel diets supplemented with marine by-products (GSE41325) [Oligo Array] Agilent-025055 Koop Lab Salmonid 44k (GPL11299) Fisheries & Oceans Canada 2012-10-03 Salmo salar
Salmo salar
5,242,680
(43,689 x 120)
120 by_platform
by_series
18 Marker gene discovery for Staphylococcus epidermidis infection in zebrafish embryos (Agilent) (GSE37227) [Oligo Array] Agilent-028233 Danio rerio Leiden custom 180k array (GPL15180) Leiden University 2012-04-12 Danio rerio
Danio rerio
5,063,016
(180,822 x 28)
28 by_platform
by_series
19 Marker gene discovery for Staphylococcus epidermidis infection in zebrafish embryos (GSE42847) [Oligo Array] Agilent-028233 Danio rerio Leiden custom 180k array (GPL15180) Leiden University 2012-12-11 Danio rerio
Danio rerio
5,063,016
(180,822 x 28)
28 by_platform
by_series
20 Discovery and validation of gene classifiers for endocrine disrupting chemicals in Zebrafish (Danio rerio) (GSE38070) [Oligo Array] Agilent-015064 D. rerio (Zebrafish) Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7302) US EPA 2012-05-21 Danio rerio
Danio rerio
4,982,670
(21,570 x 231)
50 160 21 by_platform
by_series
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