Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(9)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(10)		   Tiling Array
(10)		   cDNA Array
(77)		   Oligo Array
(224)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(67)		   Other
(1)		   All
(402)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL3644 WTSI Xenopus tropicalis 2.5K array v2.1.1 2,471 Wellcome Trust Sanger Institute 2006-04-10 WTSI Microarray facility Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Oligo Array spotted oligonucleotide, WTSI Xenopus tropicalis 2.5K array v2.1.1, GE Healthcare Codelink
2 GPL5443 Vulpe Lab UC-Berkeley Fathead Minnow v1.0 9,216 University of Miami, RSMAS 2007-06-27 Vulpe Lab UC-Berkeley Pimephales promelas
Pimephales promelas		 cDNA Array spotted DNA/cDNA, Vulpe Lab UC-Berkeley Fathead Minnow v1.0,
3 GPL4801 ViagenX MAGEX 401 ver1 812 University of Victoria 2007-01-31 ViagenX Biotech. Inc. Xenopus laevis,Rana catesbeiana
Xenopus laevis,Rana catesbeiana		 cDNA Array spotted DNA/cDNA, ViagenX MAGEX 401 ver1,
4 GPL14917 US Army Northern bobwhite (Colinus virginianus) custom brain tissue cDNA microarray 9,216 US Army ERDC 2011-11-22 US Army, Engineer Research and Development Center (ERDC) Colinus virginianus
Colinus virginianus		 cDNA Array spotted DNA/cDNA, US Army Northern bobwhite (Colinus virginianus) custom brain tissue cDNA microarray, Northern bobwhite
5 GPL10277 US Army ERDC Fathead minnow brain tissue cDNA 4K Microarray 4,128 US Army ERDC 2010-03-31 US Army ERDC Pimephales promelas
Pimephales promelas		 cDNA Array spotted DNA/cDNA, US Army ERDC Fathead minnow brain tissue cDNA 4K Microarray,
6 GPL3735 AURATUS: The goldfish environmental genomics project v1.0 19,200 University of New Brunswick 2006-05-08 University of Liverpool; Laboratory for Environmental Gene Regulation (LEGR); http://legr.liv.ac.uk/carpbase/index.htm Carassius auratus,Cyprinus carpio
Carassius auratus,Cyprinus carpio		 cDNA Array spotted DNA/cDNA, AURATUS: The goldfish environmental genomics project v1.0,
7 GPL7056 AURATUS: The goldfish environmental genomics project 17K array v1.1 17,328 University of Ottawa 2008-07-16 University of Liverpool; Laboratory for Environmental Gene Regulation (LEGR) Carassius auratus,Cyprinus carpio
Carassius auratus,Cyprinus carpio		 cDNA Array spotted DNA/cDNA, AURATUS: The goldfish environmental genomics project 17K array v1.1,
8 GPL9554 Songbird Neurogenomics Initiative 20K Array 20,160 University of Illinois 2009-11-10 University of Illinois, Functional Genomics Lab Taeniopygia guttata
Taeniopygia guttata		 cDNA Array spotted DNA/cDNA, Songbird Neurogenomics Initiative 20K Array,
9 GPL4585 Chicken Immune Sytem-Specific Microarray Version 2 804 University of Guelph 2006-11-23 University of Guelph Gallus gallus
Gallus gallus		 cDNA Array spotted DNA/cDNA, Chicken Immune Sytem-Specific Microarray Version 2 ,
10 GPL4581 Chicken Immune System-Specific Microarray 134 University of Guelph 2006-11-21 University of Guelph Gallus gallus
Gallus gallus		 cDNA Array spotted DNA/cDNA, Chicken Immune System-Specific Microarray,
11 GPL6657 EBT Cyprinus carpio cDNA 1.6K array version 1 1,566 University of Antwerp 2008-03-27 University of Antwerp_EBT Cyprinus carpio
Cyprinus carpio		 cDNA Array spotted DNA/cDNA, EBT Cyprinus carpio cDNA 1.6K array version 1, Aminosilane coated GenoramaTM microarray slides (Asper Biotech, Tartu, Estonia)
12 GPL15067 UKM Lates calcarifer liver and spleen cDNA array 1,601 Universiti Kebangsaan Malaysia 2011-12-27 Universiti Kebangsaan Malaysia Lates calcarifer
Lates calcarifer		 cDNA Array spotted DNA/cDNA, UKM Lates calcarifer liver and spleen cDNA array,
13 GPL10818 [UCDavis]-[Delta smelt]-[18240]-[V:1.2] 18,240 University of California at Davis 2010-08-18 UCDavis School of Veterinary Medicine:APC Hypomesus transpacificus
Hypomesus transpacificus		 cDNA Array spotted DNA/cDNA, [UCDavis]-[Delta smelt]-[18240]-[V:1.2], ONLY CLONES OF INTEREST HAVE BEEN SEQUENCED AND IDENTIFIED.
14 GPL2716 GRASP 16K version 2 17,328 The University of Victoria 2005-08-03 The Prostate Centre at Vancouver General Hospital, Gene Array Facility Osmerus mordax,Oncorhynchus mykiss,Salmo salar,Coregonus clupeaformis,Oncorhynchus tshawytscha
Osmerus mordax,Oncorhynchus mykiss,Salmo salar,Coregonus clupeaformis,Oncorhynchus tshawytscha		 cDNA Array spotted DNA/cDNA, GRASP 16K version 2, The microarrays have a 4-by-12 metagrid layout with 19 X19 spot subgrid, each spot having an approximate diameter and pitch of 100 um and 0.20 mm, respectively. A 280 bp GFP (green fluorescent protein) cDNA was amplified from a GFP clone (Clontech) using the primers (5'-GAAACATTCTTGGACACAAATTGG-3') and (5'-GCAGCTGTTACAAACTCAAGAAGG-3') and printed in each subgrid corner to assist in gridding. Six exogenous genome (Arabidopsis) cDNAs were amplified from the following clones kindly provided by The Arabidopsis Information Resource: rubisco activase [GenBank:T41667], protochlorophyllide reductase precursor [GenBank:R30630], chlorophyll a/b-binding protein CP29 [GenBank:N65746], PSII oxygen-evolving complex protein 2 [GenBank:H36167], tonoplast intrinsic protein root-specific RB7 [GenBank:AA067532] and ferredoxin (2Fe_2S) precursor [GenBank:W43249] and spotted in quadruplicate on each microarray. Also, a ubiquitin normalizer serially diluted (50 pg, 5 pg, 500 fg, 50 fg, 5 fg, 0.05 fg and 0.005 fg) was applied to the array. Spot morphology was assessed by visual inspection, SYBR® Green 1 (Molecular Probes) staining or hybridization with labeled non-specific probe.
15 GPL15697 Environment Canada PESC 207 gene rainbow trout 214 Simon Fraser University 2012-06-14 The Microarray Facility of The Prostate Centre at Vancouver General Hospital (Vancouver, BC, Canada) Oncorhynchus mykiss
Oncorhynchus mykiss		 cDNA Array spotted DNA/cDNA, Environment Canada PESC 207 gene rainbow trout,
16 GPL10532 CGP Atlantic cod 20K oligo array v1.0 20,000 Memorial University of Newfoundland 2010-06-11 The Atlantic Microarray Facility at the Atlantic Cancer Research Institute (Moncton, NB, Canada) Gadus morhua
Gadus morhua		 Oligo Array spotted oligonucleotide, CGP Atlantic cod 20K oligo array v1.0,
17 GPL6590 Zebrafish (Danio rerio) Compugen 16K spotted array 16,421 Institute for Molecular Bioscience, Uni of Qld 2008-03-17 SRC Microarray facility Danio rerio
Danio rerio		 Oligo Array spotted oligonucleotide, Zebrafish (Danio rerio) Compugen 16K spotted array, The Compugen 16K Danio rerio was used in the manufacture of this set. The genes were annotated manually to update the descriptions to a more in depth and comprehensive level.
18 GPL3548 SLRI_Zebrafish_3.5k_v1 12,672 SLRI/Mount Sinai Hospital 2006-03-14 SLRI/Mount Sinai Hospital, Toronto, Ontario, Canada Danio rerio
Danio rerio		 Oligo Array spotted oligonucleotide, SLRI_Zebrafish_3.5k_v1,
19 GPL2719 intestine-spleen combined array 14,532 Animal Sciences Group 2005-08-04 Saskia van Hemert Gallus gallus
Gallus gallus		 cDNA Array spotted DNA/cDNA, intestine-spleen combined array,
20 GPL10430 Rosenstiel Fundulus heteroclitus 7K array 6,857 University of Miami 2010-05-18 Rosenstiel School of Marine and Atmospheric Sciences, Crawford and Oleksiak Laboratories Fundulus heteroclitus
Fundulus heteroclitus		 cDNA Array spotted DNA/cDNA, Rosenstiel Fundulus heteroclitus 7K array,
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