Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(7)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(234)		   Tiling Array
(14)		   cDNA Array
(246)		   Oligo Array
(491)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(117)		   Other
(1)		   All
(1,115)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Characterizing gene regulatory networks in the brain of largemouth bass inhabiting rivers containing high levels of methyl-mercury (GSE38474) [Oligo Array] 020310-Agilent Micropterus salmoides 15K (GPL15650) University of New Brunswick 2012-06-04 Micropterus salmoides
Micropterus salmoides		 598,272
(15,744 x 38) 		38 by_platform
by_series
2 Characterizing gene regulatory networks in the brain of largemouth bass inhabiting rivers containing high levels of methyl-mercury (field study) (GSE38458) [Oligo Array] 020310-Agilent Micropterus salmoides 15K (GPL15650) University of New Brunswick 2012-06-04 Micropterus salmoides
Micropterus salmoides		 377,856
(15,744 x 24) 		24 by_platform
by_series
3 Characterizing gene regulatory networks in the brain of largemouth bass inhabiting rivers containing high levels of methyl-mercury (lab study) (GSE38456) [Oligo Array] 020310-Agilent Micropterus salmoides 15K (GPL15650) University of New Brunswick 2012-06-04 Micropterus salmoides
Micropterus salmoides		 220,416
(15,744 x 14) 		14 by_platform
by_series
4 Marking of the genome by H3K4 methylation prior to embryonic gene activation (GSE27314) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2011-02-14 Danio rerio
Danio rerio		 54,205,625
(2,168,225 x 25) 		25 by_platform
by_series
5 Developmental features of DNA methylation during activation of the embryonic zebrafish genome (GSE33236) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2011-10-26 Danio rerio
Danio rerio		 26,018,700
(2,168,225 x 12) 		2 10 by_platform
by_series
6 Mapping of H3K4 and H3K27 trimethylation in zebrafish cells (ChIP-chip) (GSE23691) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2010-08-18 Danio rerio
Danio rerio		 8,672,900
(2,168,225 x 4) 		4 by_platform
by_series
7 Mapping of H3K4 and H3K27 trimethylation in zebrafish cells (GSE23872) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2010-08-30 Danio rerio
Danio rerio		 8,672,900
(2,168,225 x 4) 		4 by_platform
by_series
8 Zebrafish germline small RNAs (GSE7131) [HT Sequencing] 454 GS (Danio rerio) (GPL11102) Hubrecht Institute 2007-02-26 Danio rerio
Danio rerio		 2
(0 x 2) 		2 by_platform
by_series
9 Gene expression in the olfactory epithelia of parasitic and reproductive adult sea lampreys (GSE24467) [HT Sequencing] 454 GS 20 (Petromyzon marinus) (GPL11029) Michigan State University 2010-09-30 Petromyzon marinus
Petromyzon marinus		 2
(0 x 2) 		2 by_platform
by_series
10 Global gene expression analysis of green spotted puffer fish gills in response to environmental calcium changes (GSE19854) [HT Sequencing] 454 GS FLX (Tetraodon nigroviridis) (GPL9947) Centro de Ciências do Mar (CCMAR), CIMAR-Laboratório Associado 2010-01-12 Tetraodon nigroviridis
Tetraodon nigroviridis		 5
(0 x 5) 		5 by_platform
by_series
11 Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi (GSE15556) [HT Sequencing] 454 GS FLX (Xenopus (Silurana) tropicalis) (GPL9406) Brandeis University 2009-04-05 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 2
(0 x 2) 		2 by_platform
by_series
12 Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi (GSE15556) [HT Sequencing] 454 GS FLX (Xenopus laevis) (GPL9407) Brandeis University 2009-04-05 Xenopus laevis
Xenopus laevis		 2
(0 x 2) 		2 by_platform
by_series
13 MicroRNA expression profiling after short-term exposure to TCDD in zebrafish embryos [agilent and exiqon array data] (GSE38839) [Oligo Array] 8x15K custom made zebrafish miRNA microarray [Agilent-024479] (GPL15720) Woods Hole Oceanographic Institution 2012-06-20 Danio rerio
Danio rerio		 64,020
(5,335 x 12) 		12 by_platform
by_series
14 MicroRNA expression profiling after short-term exposure to TCDD in zebrafish embryos (GSE39809) [Oligo Array] 8x15K custom made zebrafish miRNA microarray [Agilent-024479] (GPL15720) Woods Hole Oceanographic Institution 2012-08-01 Danio rerio
Danio rerio		 64,020
(5,335 x 12) 		12 by_platform
by_series
15 Expression analysis of channel catfish anterior kidney at 48h post immersion vaccination with attenuated Edwardsiella ictaluri (GSE32046) [Oligo Array] AAHRU_Channel catfish_65K array (GPL14562) USDA, ARS 2011-09-09 Ictalurus punctatus
Ictalurus punctatus		 645,612
(107,602 x 6) 		6 by_platform
by_series
16 Expression analysis of channel catfish anterior kidney at 48h post immersion challenge of vaccinated fish (28 days post vaccination with attenuated Edwardsiella ictaluri) with virulent E. ictaluri (GSE32588) [Oligo Array] AAHRU_Channel catfish_65K array (GPL14562) USDA, ARS 2011-10-04 Ictalurus punctatus
Ictalurus punctatus		 645,612
(107,602 x 6) 		6 by_platform
by_series
17 microRNAs signatures of Xenopus laevis embryo epidermis at stage 11 (non ciliated) and 26 (ciliated) using high throughput sequencing (GSE22146) [HT Sequencing] AB SOLiD System 2.0 (Xenopus laevis) (GPL10484) IPMC/CNRS 2010-06-04 Xenopus laevis
Xenopus laevis		 4
(0 x 4) 		4 by_platform
by_series
18 microRNAs-449 control vertebrate multi-ciliogenesis by repressing Notch signalling (GSE22147) [HT Sequencing] AB SOLiD System 2.0 (Xenopus laevis) (GPL10484) IPMC/CNRS 2010-06-04 Xenopus laevis
Xenopus laevis		 4
(0 x 4) 		4 by_platform
by_series
19 MicroRNA expression profiling after short-term exposure to TCDD in zebrafish embryos [miRNA-Seq data] (GSE39808) [HT Sequencing] AB SOLiD System 3.0 (Danio rerio) (GPL10658) Woods Hole Oceanographic Institution 2012-08-01 Danio rerio
Danio rerio		 12
(0 x 12) 		12 by_platform
by_series
20 MicroRNA expression profiling after short-term exposure to TCDD in zebrafish embryos (GSE39809) [HT Sequencing] AB SOLiD System 3.0 (Danio rerio) (GPL10658) Woods Hole Oceanographic Institution 2012-08-01 Danio rerio
Danio rerio		 12
(0 x 12) 		12 by_platform
by_series
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