Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)
  Primates
(37)
  Rodents
(1,748)
  Mammals
(295)
  Vertebrates
(402)
  Invertebrates
(1,004)
  Plants
(2,170)
  Bacteria
(1,636)
  Viruses
(78)
  Phages
(8)
  Unclassified
(399)
  All
(11,528)
 
  SAGE NlaIII
(9)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(77)
  Oligo Array
(224)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(402)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL15650 020310-Agilent Micropterus salmoides 15K 15,744 University of New Brunswick 2012-06-04 Agilent Micropterus salmoides
Micropterus salmoides
Oligo Array spotted oligonucleotide, 020310-Agilent Micropterus salmoides 15K,
2 GPL10835 090313_Zv7_PC_ChIP_HX1 2,168,225 University of Oslo 2010-08-18 NimbleGen Danio rerio
Danio rerio
Tiling Array in situ oligonucleotide, 090313_Zv7_PC_ChIP_HX1, Sanger Zv7 assembly Tiling of TSS (15kb upstream, 5kb downstream) native array description file: 090313_Zv7_PC_ChIP_HX1.ndf native array description file: 090313_Zv7_PC_ChIP_HX1.pos
3 GPL11102 454 GS (Danio rerio) 0 2010-10-22 Danio rerio
Danio rerio
HT Sequencing high-throughput sequencing, 454 GS (Danio rerio),
4 GPL11029 454 GS 20 (Petromyzon marinus) 0 2010-10-08 Petromyzon marinus
Petromyzon marinus
HT Sequencing high-throughput sequencing, 454 GS 20 (Petromyzon marinus),
5 GPL9947 454 GS FLX (Tetraodon nigroviridis) 0 2010-01-19 Tetraodon nigroviridis
Tetraodon nigroviridis
HT Sequencing high-throughput sequencing, 454 GS FLX (Tetraodon nigroviridis),
6 GPL9406 454 GS FLX (Xenopus (Silurana) tropicalis) 0 2009-10-08 Xenopus (Silurana) tropicalis
Xenopus tropicalis
HT Sequencing high-throughput sequencing, 454 GS FLX (Xenopus (Silurana) tropicalis),
7 GPL9407 454 GS FLX (Xenopus laevis) 0 2009-10-08 Xenopus laevis
Xenopus laevis
HT Sequencing high-throughput sequencing, 454 GS FLX (Xenopus laevis),
8 GPL15720 8x15K custom made zebrafish miRNA microarray [Agilent-024479] 5,335 Woods Hole Oceanographic Institution 2012-06-20 Agilent Technologies Danio rerio
Danio rerio
Oligo Array in situ oligonucleotide, 8x15K custom made zebrafish miRNA microarray [Agilent-024479], Arrays of this design have barcodes that begin with 16030294 or 2530294. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
9 GPL14562 AAHRU_Channel catfish_65K array 107,602 USDA, ARS 2011-09-09 NimbleGen Ictalurus punctatus
Ictalurus punctatus
Oligo Array in situ oligonucleotide, AAHRU_Channel catfish_65K array, NimbleGen design name 080813_Yeh_Catfish_expr, NimbleGen design ID 8072. Started with sequences from a previous design (design_id 1819), mysql db catfish_050412, from GenBank ESTs, and from catfish gene index at dana farber cancer inst, removed sequences from first two sources that were wholly contained in the CFGI sequences; sequences remaining 65,182; selected 3 probes per sequence, two copies on array.
10 GPL16034 AB SOLiD 3 Plus System (Danio rerio) 0 2012-09-10 Danio rerio
Danio rerio
HT Sequencing high-throughput sequencing, AB SOLiD 3 Plus System (Danio rerio),
11 GPL10484 AB SOLiD System 2.0 (Xenopus laevis) 0 2010-06-04 Xenopus laevis
Xenopus laevis
HT Sequencing high-throughput sequencing, AB SOLiD System 2.0 (Xenopus laevis),
12 GPL10658 AB SOLiD System 3.0 (Danio rerio) 0 2010-07-08 Danio rerio
Danio rerio
HT Sequencing high-throughput sequencing, AB SOLiD System 3.0 (Danio rerio),
13 GPL15153 Affymetrix Ambystoma mexicanum AMBY_002 20k array [CDF: AMBY_002a520748F] 20,080 University of Florida 2012-01-21 Affymetrix Ambystoma mexicanum
Ambystoma mexicanum
GeneChip in situ oligonucleotide, Affymetrix Ambystoma mexicanum AMBY_002 20k array [CDF: AMBY_002a520748F], AMBY_002a520748F AMBY_002a520748F.cdf Seifert_AMBY_002a520748F_probe_tab.txt
14 GPL10234 Affymetrix Chicken Genome Array [GgChicken_ENTREZG10] 12,495 Peking University 2010-03-22 Affymetrix Gallus gallus
Gallus gallus
GeneChip in situ oligonucleotide, Affymetrix Chicken Genome Array [GgChicken_ENTREZG10],
15 GPL3650 AGENAE_TroutGeneric2_9216 9,216 INRA 2006-04-12 AGENAE Microarray Facility Oncorhynchus mykiss
Oncorhynchus mykiss
cDNA Array spotted DNA/cDNA, AGENAE_TroutGeneric2_9216, spotted DNA/cDNA
16 GPL13398 Agilent chicken CGH array 420,288 China Agricultural University 2011-04-11 Agilent Gallus gallus
Gallus gallus
Oligo Array in situ oligonucleotide, Agilent chicken CGH array, Agilent design ID 031112. Platform is based on chicken genome build WUGSC 2.1/galGal3.
17 GPL7399 Agilent custom 44K chicken array 41,534 University of Toronto 2008-09-29 Agilent Technologies Gallus gallus
Gallus gallus
Oligo Array spotted oligonucleotide, Agilent custom 44K chicken array,
18 GPL7400 Agilent custom 44K frog array 41,523 University of Toronto 2008-09-29 Agilent Technologies Xenopus (Silurana) tropicalis
Xenopus tropicalis
Oligo Array spotted oligonucleotide, Agilent custom 44K frog array,
19 GPL7401 Agilent custom 44K tetraodon array 41,533 University of Toronto 2008-09-29 Agilent Technologies Tetraodon nigroviridis
Tetraodon nigroviridis
Oligo Array spotted oligonucleotide, Agilent custom 44K tetraodon array,
20 GPL14155 Agilent custom array Minitrout 12.8K ID:032303 12,884 INIA 2011-08-17 AGILENT Oncorhynchus mykiss
Oncorhynchus mykiss
Oligo Array in situ oligonucleotide, Agilent custom array Minitrout 12.8K ID:032303,
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