Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(9)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(14)
  Tiling Array
(10)
  cDNA Array
(79)
  Oligo Array
(252)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(2)
  HT-Seq
(81)
  Other
(1)
  All
(450)
 
1   |   2   |   3   |   4   |   5      »      [23]
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL1319 [Zebrafish] Affymetrix Zebrafish Genome Array 15,617 Affymetrix, Inc. 2004-07-01 Affymetrix Danio rerio
Danio rerio
GeneChip in situ oligonucleotide, [Zebrafish] Affymetrix Zebrafish Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The Affymetrix GeneChip Zebrafish Genome Array can be used to study gene expression of over 14,900 Danio rerio transcripts. Sequence information for this array was selected from the following public data sources: RefSeq (July 2003), GenBank (release 136.0, June 2003), dbEST (July 2003), and UniGene (Build 54, June 2003). Probe sets on the array were designed with 16 oligonucleotide pairs to detect each transcript. This array was designed in collaboration with representative members of the Zebrafish community and the National Institutes of Health. Note: The DsRed probe set is provided with permission from BD Biosciences, and BD Biosciences grants users a limited license to utilize this probe set only on the Affymetrix array. Other uses of the probe set, or other DsRed sequence or sequences requires a license from BD Biosciences. Annotations derived from Affymetrix CSV file dated 6/23/2004
2 GPL18378 [ZebGene-1_1-st] Affymetrix Genechip Zebrafish ST Genome Array 1.1, brainarray version 15 [zebgene11st_Dr_ENTREZG] 23,877 Affymetrix, Inc. 2014-03-05 Affymetrix Danio rerio
Danio rerio
GeneChip in situ oligonucleotide, [ZebGene-1_1-st] Affymetrix Genechip Zebrafish ST Genome Array 1.1, brainarray version 15 [zebgene11st_Dr_ENTREZG], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
3 GPL16933 [ZebGene-1_0-st] Zebrafish Gene 1.0 ST Array [transcript (gene) version] 75,212 Affymetrix, Inc. 2013-03-29 Affymetrix Danio rerio
Danio rerio
GeneChip in situ oligonucleotide, [ZebGene-1_0-st] Zebrafish Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Jan 29, 2013: annotation table updated with netaffx build 33
4 GPL10263 [X_tropicalis] Affymetrix Xenopus tropicalis Genome Array 59,021 Affymetrix, Inc. 2010-03-29 Affymetrix Xenopus (Silurana) tropicalis
Xenopus tropicalis
GeneChip in situ oligonucleotide, [X_tropicalis] Affymetrix Xenopus tropicalis Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This array was designed in close collaboration with the Xenopus research community as part of the Affymetrix® GeneChip Consortia Program. Sequences used in the design of the array were selected from the Xenopus tropicalis UniGene database (Build 30, July 2006), GenBank® mRNAs for Xenopus tropicalis (up to September 12, 2006), and predicted gene sets from both the DOE Joint Genome Institute (Xentr4 transcripts, file creation date August 17, 2005, download date May 25, 2006) and Ensembl (release 40, download date May 2006).
5 GPL10756 [X_laevis_2] Affymetrix Xenopus laevis Genome 2.0 Array 32,635 Affymetrix, Inc. 2010-08-03 Affymetrix Xenopus laevis
Xenopus laevis
GeneChip in situ oligonucleotide, [X_laevis_2] Affymetrix Xenopus laevis Genome 2.0 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
6 GPL1318 [Xenopus_laevis] Affymetrix Xenopus laevis Genome Array 15,611 Affymetrix, Inc. 2004-06-30 Affymetrix Xenopus laevis
Xenopus laevis
GeneChip in situ oligonucleotide, [Xenopus_laevis] Affymetrix Xenopus laevis Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The Affymetrix GeneChip Xenopus laevis Genome Array can be used to study gene expression of over 14,400 Xenopus laevis transcripts. Sequence information for this array was selected from the following public data sources: GenBank (release 135.0, April 2003), dbEST (June 2003), and UniGene (Build 36, June 2003). Probe sets on the array were designed with 16 oligonucleotide pairs to detect each transcript. This array was designed in collaboration with representative members of the Xenopus community and the National Institutes of Health. More information on the design of this array can be found at www.xenbase.org Note: The DsRed probe set is provided with permission from BD Biosciences, and BD Biosciences grants users a limited license to utilize this probe set only on the Affymetrix array. Other uses of the probe set, or other DsRed sequence or sequences requires a license from BD Biosciences.
7 GPL10818 [UCDavis]-[Delta smelt]-[18240]-[V:1.2] 18,240 University of California at Davis 2010-08-18 UCDavis School of Veterinary Medicine:APC Hypomesus transpacificus
Hypomesus transpacificus
cDNA Array spotted DNA/cDNA, [UCDavis]-[Delta smelt]-[18240]-[V:1.2], ONLY CLONES OF INTEREST HAVE BEEN SEQUENCED AND IDENTIFIED.
8 GPL17605 [MPIO-ZF1s520811] Affymetrix Zebra finch Custom Array [transcript version] 30,994 Max Planck Institute for Ornithology 2013-08-21 Affymetrix Taeniopygia guttata
Taeniopygia guttata
GeneChip in situ oligonucleotide, [MPIO-ZF1s520811] Affymetrix Zebra finch Custom Array [transcript version], MYGENECHIP2 RNA HD 1M, 5 micron feature size, 49 Array format. The arrays contain a total of 232,620 probes sets and 5,730,824 probes. Whole transcript Sense cDNA target type.
9 GPL16788 [FinGene-1_0-st] Zebra Finch Gene 1.0 ST Array [transcript (gene) version] 28,296 Affymetrix, Inc. 2013-03-14 Affymetrix Taeniopygia guttata
Taeniopygia guttata
GeneChip in situ oligonucleotide, [FinGene-1_0-st] Zebra Finch Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Thu Oct 20 14:39:28 PDT 2011 #%chip_type=FinGene-1_0-st-v1 #%lib_set_name=FinGene-1_0-st #%lib_set_version=v1 #%genome-species=Taeniopygia guttata #%genome-version=taeGut1 #%genome-version-create_date=2008-07-00 #%annotation-version=design-time
10 GPL18366 [ChiGene-1_0-st] Affymetrix Chicken Gene 1.0 ST Array [transcript (gene) version] 20,425 Affymetrix, Inc. 2014-03-04 Affymetrix Gallus gallus
Gallus gallus
GeneChip in situ oligonucleotide, [ChiGene-1_0-st] Affymetrix Chicken Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Mon Oct 1 15:31:00 2012 PDT #%chip_type=ChiGene-1_0-st-v1 #%lib_set_name=ChiGene-1_0-st #%lib_set_version=v1 #%genome-species=Gallus gallus #%genome-version=galgal3 #%genome-version-ucsc=galgal3 #%genome-version-create_date=2006-05-00 #%genome-lifted-method=NONE #%genome-lifted_from-species=Gallus gallus #%genome-lifted_from-version-ucsc=galgal3 #%netaffx-annotation-date=2012-09-15 #%netaffx-annotation-netaffx-build=33 #%netaffx-annotation-tabular-data-version=1.1 #%netaffx-annotation-tabular-format-version=1.1 #%netaffx-annotation-data-type=transcript_cluster #%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl #%netaffx-annotation-docgen-version=8487 #%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk= #%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=
11 GPL18368 [ChiGene-1_0-st] Affymetrix Chicken Gene 1.0 ST Array [probeset version] 165,995 Affymetrix, Inc. 2014-03-04 Affymetrix Gallus gallus
Gallus gallus
GeneChip in situ oligonucleotide, [ChiGene-1_0-st] Affymetrix Chicken Gene 1.0 ST Array [probeset version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Mon Apr 15 11:23:16 2013 PDT #%chip_type=ChiGene-1_0-st-v1 #%lib_set_name=ChiGene-1_0-st #%lib_set_version=v1 #%genome-species=Gallus gallus #%genome-version=galgal3 #%genome-version-ucsc=galgal3 #%genome-version-create_date=2006-05-00 #%genome-lifted-method=NONE #%genome-lifted_from-species=Gallus gallus #%genome-lifted_from-version-ucsc=galgal3 #%netaffx-annotation-date=2012-09-15 #%netaffx-annotation-netaffx-build=33 #%netaffx-annotation-tabular-data-version=1.1 #%netaffx-annotation-tabular-format-version=1.1 #%netaffx-annotation-data-type=probe_set #%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl #%netaffx-annotation-docgen-version=8487 #%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk= #%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=
12 GPL3213 [Chicken] Affymetrix Chicken Genome Array 38,535 Affymetrix, Inc. 2005-11-30 Affymetrix Gallus gallus
Gallus gallus
GeneChip in situ oligonucleotide, [Chicken] Affymetrix Chicken Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Sequence information for the GeneChip Chicken Genome Array can be used to study gene expression of 33,457 chicken and viral transcripts. Species covered include Gallus gallus (chicken) and 17 avian viruses. Sequence information for this array includes public content from GenBank®, UniGene (Build 18; 15 May 2004), and Ensembl (version 1, released May 2004). Probe sets on the array were designed with 11 oligonucleotide pairs to detect each transcript.
13 GPL8222 Zoarces viviparus validation microarray 124,992 University of Gothenburg 2009-02-23 Department of Zoology, University of Gothenburg / Febit gmbh, Heidelberg, Germany Zoarces viviparus
Zoarces viviparus
Oligo Array in situ oligonucleotide, Zoarces viviparus validation microarray, This microarray contains 117,316 probes used to evaluate the transcript assembly described in Kristiansson et al 2009.
14 GPL2715 Zf_16.5K_oligo_COMP_v3Apx 16,512 National University of Singapore 2005-08-03 Genome Institute of Singapore Danio rerio
Danio rerio
Oligo Array spotted oligonucleotide, Zf_16.5K_oligo_COMP_v3Apx, This set includes 16416 oligo probes (60 mers) designed by Compugen-Sigma. Spotted long oligonucleotide array on glass
15 GPL4737 Zebrafish Paired End DiTags 663,674 Genome Institute Of Singapore 2007-01-09 not applicable Danio rerio
Danio rerio
Other other, Zebrafish Paired End DiTags, Paired End DiTags (PET) derived from 5 Zebrafish libraries. Used a DNA tag sequencing and mapping strategy called gene identification signature (GIS) analysis, in which 5' and 3' signatures of full-length cDNAs are accurately extracted into paired-end ditags (PETs) that are concatenated for efficient sequencing and mapped to genome sequences to demarcate the transcription boundaries of every gene. GIS analysis is potentially 30-fold more efficient than standard cDNA sequencing approaches for transcriptome characterization. Mappings based on Genome Build: Zv6 (March 2006)
16 GPL5720 Zebrafish Oligonucleotide Library (Compugen) 17,280 University of North Carolina at Chapel Hill 2007-08-07 Compugen Danio rerio
Danio rerio
Oligo Array spotted oligonucleotide, Zebrafish Oligonucleotide Library (Compugen), This set of zebrafish oligonucleotides was designed by Compugen and synthesized by Sigma-Genosys. The set consists of 16,399 65-mer oligonucleotides representing 16,228 gene clusters and 171 control elements. Compugen and Sigma-Genosys no longer sell or support this product. Sequences are not for commercial use, copyright reserved to Compugen 2002.
17 GPL7556 Zebrafish Oligonucleotide Library (Compugen) 16,399 University of Oregon 2008-11-04 Compugen Danio rerio
Danio rerio
Oligo Array spotted oligonucleotide, Zebrafish Oligonucleotide Library (Compugen), This set of zebrafish oligonucleotides was designed by Compugen and synthesized by Sigma-Genosys. The set consists of 16,399 65-mer oligonucleotides representing 16,228 gene clusters and 171 control elements. Compugen and Sigma-Genosys no longer sell or support this product. Sequences are not for commercial use, copyright reserved to Compugen 2002.
18 GPL3721 Zebrafish Oligonucleotide Array (Compugen) 16,399 University of Chicago 2006-05-02 Compugen Danio rerio
Danio rerio
Oligo Array spotted oligonucleotide, Zebrafish Oligonucleotide Array (Compugen), The Compugen set of zebrafish oligonucleotides was designed by Compugen based on ESTs, mostly from the Washington University Zebrafish Genome Assemblies. Compugen no longer sell or support this product. Sequences are not for commercial use, copyright reserved to Compugen 2002.
19 GPL1743 Zebrafish nucleotide array 15,174 Leiden University 2004-12-10 Danio rerio
Danio rerio
Oligo Array spotted oligonucleotide, Zebrafish nucleotide array, Microarrays of the MWG 14k Zebrafish Oligonucleotide Set were produced using the facilities of the Leiden Genome Technology Center (http://www.lgtc.nl). Oligonucleotides were dissolved in 150mM phosphate buffer (pH 8.5) to a concentration of 20 µM. With Omnigrid 100 (Genemachines) oligonucleotides were spotted on Codelink activated slides (Amersham Biosciences) according to the Amersham Codelink protocol and as described in (‘t Hoen et al 2003 and Meijer et al 2004). Microarrays were spotted according to the MIAME guidelines with 15.532 unique zebrafish oligonucleotides from the MWG oligonucleotide set. Ambion’s arraycontrol oligonucleotides (8 sense oligos) and 3 custom designed oligonucleotides were spotted together with the MWG oligonucleotide set. Spotted Codelink activated slides were treated with blocking solution and washed according to the manufacturer’s instructions.
20 GPL9074 Zebrafish custom Agilent temperature_cadmium microarray 15,208 University of Antwerp 2009-08-21 Agilent Danio rerio
Danio rerio
Oligo Array in situ oligonucleotide, Zebrafish custom Agilent temperature_cadmium microarray, A custom cadmium and temperature specific 15k microarray was designed. For this purpose 16 Agilent zebrafish 44k full genome microarray (version V2, AMADID 019161, containing 43,604 unique probes) hybridizations were performed on a subsample of the test samples from a temperature experiment and a cadmium exposure (performed with the intention of comparing temperature and cadmium responses in zebrafish). Probes that were differentially expressed under these conditions were included in the custom design and supplemented with GO-annotated probes from the full genome microarray probe set.
1   |   2   |   3   |   4   |   5      »      [23]