Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(74)		   Primates
(0)		   Rodents
(36)		   Mammals
(9)		   Vertebrates
(11)		   Invertebrates
(39)		   Plants
(54)		   Bacteria
(33)		   Viruses
(1)		   Phages
(0)		   Unclassified
(1)		   All
(258)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(0)		   cDNA Array
(5)		   Oligo Array
(6)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(11)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL3936 Carnegie Xenopus laevis 22k Micorarray v2 22,575 National Institutes of Health/National Institute of Child Health and Human Development 2006-06-28 Agilent Technologies Xenopus laevis
Xenopus laevis		 Oligo Array in situ oligonucleotide, Carnegie Xenopus laevis 22k Micorarray v2,
2 GPL3728 Xenopus tropicalis genome oligo set 10,910 Gurdon Institute 2006-05-04 operon Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Oligo Array spotted oligonucleotide, Xenopus tropicalis genome oligo set,
3 GPL3644 WTSI Xenopus tropicalis 2.5K array v2.1.1 2,471 Wellcome Trust Sanger Institute 2006-04-10 WTSI Microarray facility Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Oligo Array spotted oligonucleotide, WTSI Xenopus tropicalis 2.5K array v2.1.1, GE Healthcare Codelink
4 GPL3621 NIH-DUKE ZEBRAFINCH 18K v1.0 18,432 Duke University Medical Center 2006-04-04 NIH Neuroscience Microarray Consortium, DUKE-Erich Jarvis Lab Taeniopygia guttata
Taeniopygia guttata		 cDNA Array spotted DNA/cDNA, NIH-DUKE ZEBRAFINCH 18K v1.0,
5 GPL3650 AGENAE_TroutGeneric2_9216 9,216 INRA 2006-04-12 AGENAE Microarray Facility Oncorhynchus mykiss
Oncorhynchus mykiss		 cDNA Array spotted DNA/cDNA, AGENAE_TroutGeneric2_9216, spotted DNA/cDNA
6 GPL3713 UWVJLAB RT 150 v.1.0 384 Woods Hole Oceanographic Institution 2006-05-01 Genomics and Microarray Laboratory, University of Guelph Oncorhynchus mykiss
Oncorhynchus mykiss		 cDNA Array spotted DNA/cDNA, UWVJLAB RT 150 v.1.0,
7 GPL3731 Chick Pineal 2006 8,084 Texas A&M University 2006-05-05 Laboratory for Functional Genomics, Department of Biology, Texas A&M University, College Station, TX 77843 Gallus gallus
Gallus gallus		 cDNA Array spotted DNA/cDNA, Chick Pineal 2006,
8 GPL3766 Zebrafish 44K oligo promoter array_Slide 1 of 2 44,290 Whitehead Institute 2006-05-15 Agilent Technology Danio rerio
Danio rerio		 Oligo Array spotted oligonucleotide, Zebrafish 44K oligo promoter array_Slide 1 of 2, Microarrays were designed as described below and manufactured by Agilent Technologies (www.agilent.com). Further information on design can be found at http://jura.wi.mit.edu/bioc/gbell/zfish_chip/. The Whitehead zebrafish promoter chipsets were designed for large-scale chromatin immunoprecipitation using microarrays (ChIP chips). The chipsets represent the promoters of about 11,000 transcriptional units derived using transcript sequences from Refseq, Ensembl, Vega, ZGC, and the Zon Lab. The 2-chipset represents proximal promoters (-1500 nt to +500 nt from the transciptional start site [tss]) on two microarrays of the same density. Probes are spaced an average of 250 nt apart.
9 GPL3767 Zebrafish 44K oligo promoter array_Slide 2 of 2 44,290 Whitehead Institute 2006-05-15 Agilent Technology Danio rerio
Danio rerio		 Oligo Array spotted oligonucleotide, Zebrafish 44K oligo promoter array_Slide 2 of 2, Microarrays were designed as described below and manufactured by Agilent Technologies (www.agilent.com). Further information on design can be found at http://jura.wi.mit.edu/bioc/gbell/zfish_chip/. The Whitehead zebrafish promoter chipsets were designed for large-scale chromatin immunoprecipitation using microarrays (ChIP chips). The chipsets represent the promoters of about 11,000 transcriptional units derived using transcript sequences from Refseq, Ensembl, Vega, ZGC, and the Zon Lab. The 2-chipset represents proximal promoters (-1500 nt to +500 nt from the transciptional start site [tss]) on two microarrays of the same density. Probes are spaced an average of 250 nt apart.
10 GPL3721 Zebrafish Oligonucleotide Array (Compugen) 16,399 University of Chicago 2006-05-02 Compugen Danio rerio
Danio rerio		 Oligo Array spotted oligonucleotide, Zebrafish Oligonucleotide Array (Compugen), The Compugen set of zebrafish oligonucleotides was designed by Compugen based on ESTs, mostly from the Washington University Zebrafish Genome Assemblies. Compugen no longer sell or support this product. Sequences are not for commercial use, copyright reserved to Compugen 2002.
11 GPL3735 AURATUS: The goldfish environmental genomics project v1.0 19,200 University of New Brunswick 2006-05-08 University of Liverpool; Laboratory for Environmental Gene Regulation (LEGR); http://legr.liv.ac.uk/carpbase/index.htm Carassius auratus,Cyprinus carpio
Carassius auratus,Cyprinus carpio		 cDNA Array spotted DNA/cDNA, AURATUS: The goldfish environmental genomics project v1.0,
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