Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(9)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(10)		   Tiling Array
(10)		   cDNA Array
(77)		   Oligo Array
(224)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(67)		   Other
(1)		   All
(402)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL11077 WHOI Zebrafish 44k v1.0 custom-commercial Chemical Defensome 21,893 Woods Hole Oceanographic Institution 2010-10-20 Agilent Danio rerio
Danio rerio		 Oligo Array in situ oligonucleotide, WHOI Zebrafish 44k v1.0 custom-commercial Chemical Defensome,
2 GPL15720 8x15K custom made zebrafish miRNA microarray [Agilent-024479] 5,335 Woods Hole Oceanographic Institution 2012-06-20 Agilent Technologies Danio rerio
Danio rerio		 Oligo Array in situ oligonucleotide, 8x15K custom made zebrafish miRNA microarray [Agilent-024479], Arrays of this design have barcodes that begin with 16030294 or 2530294. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
3 GPL3713 UWVJLAB RT 150 v.1.0 384 Woods Hole Oceanographic Institution 2006-05-01 Genomics and Microarray Laboratory, University of Guelph Oncorhynchus mykiss
Oncorhynchus mykiss		 cDNA Array spotted DNA/cDNA, UWVJLAB RT 150 v.1.0,
4 GPL3766 Zebrafish 44K oligo promoter array_Slide 1 of 2 44,290 Whitehead Institute 2006-05-15 Agilent Technology Danio rerio
Danio rerio		 Oligo Array spotted oligonucleotide, Zebrafish 44K oligo promoter array_Slide 1 of 2, Microarrays were designed as described below and manufactured by Agilent Technologies (www.agilent.com). Further information on design can be found at http://jura.wi.mit.edu/bioc/gbell/zfish_chip/. The Whitehead zebrafish promoter chipsets were designed for large-scale chromatin immunoprecipitation using microarrays (ChIP chips). The chipsets represent the promoters of about 11,000 transcriptional units derived using transcript sequences from Refseq, Ensembl, Vega, ZGC, and the Zon Lab. The 2-chipset represents proximal promoters (-1500 nt to +500 nt from the transciptional start site [tss]) on two microarrays of the same density. Probes are spaced an average of 250 nt apart.
5 GPL3767 Zebrafish 44K oligo promoter array_Slide 2 of 2 44,290 Whitehead Institute 2006-05-15 Agilent Technology Danio rerio
Danio rerio		 Oligo Array spotted oligonucleotide, Zebrafish 44K oligo promoter array_Slide 2 of 2, Microarrays were designed as described below and manufactured by Agilent Technologies (www.agilent.com). Further information on design can be found at http://jura.wi.mit.edu/bioc/gbell/zfish_chip/. The Whitehead zebrafish promoter chipsets were designed for large-scale chromatin immunoprecipitation using microarrays (ChIP chips). The chipsets represent the promoters of about 11,000 transcriptional units derived using transcript sequences from Refseq, Ensembl, Vega, ZGC, and the Zon Lab. The 2-chipset represents proximal promoters (-1500 nt to +500 nt from the transciptional start site [tss]) on two microarrays of the same density. Probes are spaced an average of 250 nt apart.
6 GPL6018 Agilent-016320 rainbow trout 37K oligo array [Feature number version] 45,220 West Virginia University 2007-10-18 Agilent Technologies Oncorhynchus mykiss
Oncorhynchus mykiss		 Oligo Array in situ oligonucleotide, Agilent-016320 rainbow trout 37K oligo array [Feature number version], Custom Microarrays
7 GPL8205 Agilent-016271 rainbow trout 37K oligo array [Feature number version] 45,220 West Virginia University 2009-02-19 Agilent Technologies Oncorhynchus mykiss
Oncorhynchus mykiss		 Oligo Array in situ oligonucleotide, Agilent-016271 rainbow trout 37K oligo array [Feature number version], Custom Microarrays
8 GPL15258 Agilent-016320 rainbow trout 37K oligo array [Probe name version] 37,455 West Virginia University 2012-02-21 Agilent Technologies Oncorhynchus mykiss
Oncorhynchus mykiss		 Oligo Array in situ oligonucleotide, Agilent-016320 rainbow trout 37K oligo array [Probe name version], Custom Microarrays
9 GPL3644 WTSI Xenopus tropicalis 2.5K array v2.1.1 2,471 Wellcome Trust Sanger Institute 2006-04-10 WTSI Microarray facility Xenopus (Silurana) tropicalis
Xenopus tropicalis		 Oligo Array spotted oligonucleotide, WTSI Xenopus tropicalis 2.5K array v2.1.1, GE Healthcare Codelink
10 GPL8861 ARK-Genomics G. gallus 20K v2 (duplicated spots) 40,916 Wageningen University 2009-07-15 ARK-Genomics, Roslin Institute, Roslin, Midlothian, EH25 9PS, United Kingdom Gallus gallus
Gallus gallus		 Oligo Array spotted oligonucleotide, ARK-Genomics G. gallus 20K v2 (duplicated spots),
11 GPL5442 Gallus gallus 3k multi-sample microarray platform 3,072 Virginia Tech 2007-06-27 MOA Laboratory of Animal Genetics and Breeding, Collage of Animal Science and Technology, China Agriculture University, Beijing, People’s Republic of China, 100094. Gallus gallus
Gallus gallus		 Oligo Array spotted oligonucleotide, Gallus gallus 3k multi-sample microarray platform,
12 GPL5478 OSUrbt Oncorhynchus mykiss 1.6K v2.0 update 07.05.07 4,096 Utah State University 2007-07-09 Oregon State University Oncorhynchus mykiss
Oncorhynchus mykiss		 Oligo Array spotted oligonucleotide, OSUrbt Oncorhynchus mykiss 1.6K v2.0 update 07.05.07, 4 X 4 pin arrangement Microspot 2500 pins (quill design)
13 GPL14562 AAHRU_Channel catfish_65K array 107,602 USDA, ARS 2011-09-09 NimbleGen Ictalurus punctatus
Ictalurus punctatus		 Oligo Array in situ oligonucleotide, AAHRU_Channel catfish_65K array, NimbleGen design name 080813_Yeh_Catfish_expr, NimbleGen design ID 8072. Started with sequences from a previous design (design_id 1819), mysql db catfish_050412, from GenBank ESTs, and from catfish gene index at dana farber cancer inst, removed sequences from first two sources that were wholly contained in the CFGI sequences; sequences remaining 65,182; selected 3 probes per sequence, two copies on array.
14 GPL8616 Avian intestinal intraepithelial lymphocyte cDNA microarray (AVIELA) version 2 21,168 USDA, ARS 2009-05-29 Lab of Dr. Hyun Lillehoj, Animal Parasitic Diseases Laboratory, ARS, US Department of Agriculture Gallus gallus
Gallus gallus		 Oligo Array spotted oligonucleotide, Avian intestinal intraepithelial lymphocyte cDNA microarray (AVIELA) version 2,
15 GPL6516 US EPA Ecoarray FHM Pimephales promelas 10K 2000 gene (pilot) array 10,262 US EPA 2008-02-21 Agilent, Palo Alto, CA, USA Pimephales promelas
Pimephales promelas		 Oligo Array spotted oligonucleotide, US EPA Ecoarray FHM Pimephales promelas 10K 2000 gene (pilot) array,
16 GPL8595 USDA 9.6K avian intestinal intraepithelial lymphocyte cDNA microarray (AVIELA) version 1 21,168 US Department of Agriculture 2009-05-26 Lab of Dr. Hyun Lillehoj, Animal Parasitic Diseases Laboratory, ARS, US Department of Agriculture (USDA) Gallus gallus
Gallus gallus		 cDNA Array spotted DNA/cDNA, USDA 9.6K avian intestinal intraepithelial lymphocyte cDNA microarray (AVIELA) version 1,
17 GPL10260 Invitrogen custom fathead minnow oligonucleotide microarray 22,176 US Army ERDC 2010-03-29 Invitrogen Pimephales promelas
Pimephales promelas		 Oligo Array in situ oligonucleotide, Invitrogen custom fathead minnow oligonucleotide microarray, Arrays were printed in house with 21,000 oligonuclotide probes generated by Invitrogen.
18 GPL10259 Agilent-019597 custom fathead minnow 60mer (8x15k) 15,268 US Army ERDC 2010-03-29 Agilent Pimephales promelas
Pimephales promelas		 Oligo Array in situ oligonucleotide, Agilent-019597 custom fathead minnow 60mer (8x15k),
19 GPL14917 US Army Northern bobwhite (Colinus virginianus) custom brain tissue cDNA microarray 9,216 US Army ERDC 2011-11-22 US Army, Engineer Research and Development Center (ERDC) Colinus virginianus
Colinus virginianus		 cDNA Array spotted DNA/cDNA, US Army Northern bobwhite (Colinus virginianus) custom brain tissue cDNA microarray, Northern bobwhite
20 GPL10277 US Army ERDC Fathead minnow brain tissue cDNA 4K Microarray 4,128 US Army ERDC 2010-03-31 US Army ERDC Pimephales promelas
Pimephales promelas		 cDNA Array spotted DNA/cDNA, US Army ERDC Fathead minnow brain tissue cDNA 4K Microarray,
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