Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(129)		   Primates
(2)		   Rodents
(67)		   Mammals
(8)		   Vertebrates
(14)		   Invertebrates
(24)		   Plants
(99)		   Bacteria
(32)		   Viruses
(1)		   Phages
(1)		   Unclassified
(8)		   All
(385)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(0)		   cDNA Array
(2)		   Oligo Array
(12)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(14)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL14841 Ecogenomis Medaka EG21000 CustomArray 21,377 Toyo University 2011-11-04 Ecogenomis, Inc./CustomArray Inc. Oryzias latipes
Oryzias latipes		 Oligo Array spotted oligonucleotide, Ecogenomis Medaka EG21000 CustomArray, Japanese medaka oligo DNA (35 to 40-mer) 20,960 spots were designated to Oryzias latipes (medaka fish) gene probes on this microarray. In addition, 351 negative control probes (derived from bacteria, plants, and bacteriophages) were spotted, and 66 factory QC probes were also spotted on the microarray. Therefore, signal data from total of 417 control spots were included in 21,377-spot data on the custom-designed Oryzias latipes 21K oligo DNA microarray.
2 GPL15686 Agilent-034067 Oncorhynchus mykiss RTG_Array_Ver.1 032182 55,988 Tokyo University of Marine Science and Technology 2012-06-11 Agilent Technologies Oncorhynchus mykiss
Oncorhynchus mykiss		 Oligo Array in situ oligonucleotide, Agilent-034067 Oncorhynchus mykiss RTG_Array_Ver.1 032182, Arrays of this design have barcodes that begin with 16034067 or 2534067. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
3 GPL11394 Paralichthys olivaceus oligo microarray 8x15K v1.1 (Agilent custom) 10,593 Tokyo University of Marine Science and Technology 2011-01-07 Agilent Paralichthys olivaceus
Paralichthys olivaceus		 Oligo Array in situ oligonucleotide, Paralichthys olivaceus oligo microarray 8x15K v1.1 (Agilent custom), This 8x15 K oligo DNA array was custom designed against Japanese flounder (Paralichthys olivaceus) mRNA sequence (data obtained on 5, Oct. 09' from DDBJ) and assembled EST sequences (data obtained on 27, Aug. 09' from DDBJ).
4 GPL10726 Xenopus Gene Expression Microarray (AMADID: 015066) 21,495 Shizuoka University 2010-07-26 Agilent Technologies Inc. Xenopus laevis
Xenopus laevis		 Oligo Array in situ oligonucleotide, Xenopus Gene Expression Microarray (AMADID: 015066),
5 GPL6976 Rana pirica tadpole-stage cDNA 3k array 3,072 Nihon University 2008-06-19 DNA Tip Institute Rana pirica
Rana pirica		 cDNA Array spotted DNA/cDNA, Rana pirica tadpole-stage cDNA 3k array, Tadpole Rana pirica cDNA microarray Keywords = Tadpole Rana pirica Keywords = cDNA array Keywords = gene expression
6 GPL14620 Gallus gallus 1x385K gene expression array_GFC105_Ggul 38,723 National Institute of Animal Health 2011-09-26 NimbleGen Gallus gallus
Gallus gallus		 Oligo Array in situ oligonucleotide, Gallus gallus 1x385K gene expression array_GFC105_Ggul, A 1:2 density and 60-mer expression design was used for the custom design. 38,723 genes from Gallus gallus were targeted and each gene have 9 independent probes. There is no replication so that there are totally 348,102 probes on the array. NimbleGen's design name is 2006-02-10_GFC105_Ggul_60mer. The .ndf and .ngd files are linked below as supplementary files. native array description file :2006-02-10_GFC105_Ggul_60mer.ndf native array description file :2006-02-10_GFC105_Ggul_60mer.ngd DESIGN_ID : 3053
7 GPL8310 NimbleGen Oryzias latipes_TIGR_rel5 (GFC023) 27k array 26,689 National Institute of Advanced Industrial Science and Technology 2009-03-16 Roche NimbleGen Oryzias latipes
Oryzias latipes		 Oligo Array in situ oligonucleotide, NimbleGen Oryzias latipes_TIGR_rel5 (GFC023) 27k array, Species: Oryzias latipes (Japanese Medaka) Data source: TIGR (The Institute for Genomic Research), TIGR Oryzias latipes Gene Index (OlGI) Version 5.0 http://www.tigr.org/tdb/tgi/olgi/ Release Date: May 17, 2004 Custom array design: 2004-10-01_GFC023_Oryzia_latipes_TIGR_rel5_1in4 Oligo probe length: 60mer Target probes: 12,849 TC (Tentative Consensus) 13,669 singleton ESTs 171 singleton ETs Probe design on array: 26,689 (target) x7 (set/target) x1 (noreplicate) The Platform data table is a condensed representation of the physical array. Total targets: 26,580 Native NimbleGen files (ndf and ngd) are linked below as supplementary files.
8 GPL14379 MZH_Zebrafish_16k_v1.0 18,144 Mie University Graduate School of Bioresources 2011-09-06 Mie university Danio rerio
Danio rerio		 Oligo Array spotted oligonucleotide, MZH_Zebrafish_16k_v1.0,
9 GPL15646 Agilent customized Chicken CGH Microarray 4x180K 170,000 Kyoto University 2012-06-04 Agilent Technologies Gallus gallus
Gallus gallus		 Oligo Array in situ oligonucleotide, Agilent customized Chicken CGH Microarray 4x180K,
10 GPL9033 CERI_Medaka-array 4x44K ver.1.0 37,815 Japan Pulp and Paper Research Institute, Inc. 2009-08-13 Agilent Technologies Oryzias latipes
Oryzias latipes		 Oligo Array in situ oligonucleotide, CERI_Medaka-array 4x44K ver.1.0,
11 GPL11020 NIBB Xenopus laevis 4.6K 4,608 Hiroshima University 2010-10-06 Division of Morphogenesis, National Institute for Basic Biology, Nishigonaka, Myodaiji, Okazaki, Aichi 444-8585, Japan. Xenopus laevis
Xenopus laevis		 cDNA Array spotted DNA/cDNA, NIBB Xenopus laevis 4.6K,
12 GPL2093 NimbleGen/GeneFrontier Medaka array 2.0 192,500 GeneFrontier Corporation 2005-05-18 GeneFrontier Corporation Oryzias latipes
Oryzias latipes		 Oligo Array in situ oligonucleotide, NimbleGen/GeneFrontier Medaka array 2.0, Target sequences come from TIGR Medaka Gene Index Release 5.0 (May 17, 2004). Number of targets: 26,689 Number of probes per target: 7 Length of probes: 60mer Keywords = medaka Keywords = Oryzia latipes Keywords = high density Keywords = custom array
13 GPL5182 MWG_Zebrafish_14K 14,067 Acdemia Sinica 2007-05-19 MWG Danio rerio
Danio rerio		 Oligo Array spotted oligonucleotide, MWG_Zebrafish_14K,
14 GPL15425 Agilent-030568 Custom Oryzias latipes microarray (UT2010) 45,220 Graduate School of Science, Kyoto University 2012-04-11 Agilent Technologies Oryzias latipes
Oryzias latipes		 Oligo Array in situ oligonucleotide, Agilent-030568 Custom Oryzias latipes microarray (UT2010), Arrays of this design have barcodes that begin with 16030568 or 2530568. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
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