Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(7)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(265)
  Tiling Array
(14)
  cDNA Array
(268)
  Oligo Array
(606)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(2)
  HT-Seq
(198)
  Other
(1)
  All
(1,364)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 [E-TABM-722] Transcription factor binding evolution in five vertebrates (GSE22078) [HT Sequencing] Illumina Genome Analyzer (Gallus gallus) (GPL10223) European Bioinformatics Institute 2010-06-01 Gallus gallus
Gallus gallus
6
(0 x 6)
6 by_platform
by_series
2 [E-MTAB-460] Sanger_zebrafish_sequencing (GSE30608) [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) European Bioinformatics Institute 2011-07-12 Danio rerio
Danio rerio
12
(0 x 12)
3 3 6 by_platform
by_series
3 [E-MTAB-434] Transcription profiling by high throughput sequencing of zebra fish tissues and developmental stages (GSE30603) [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) European Bioinformatics Institute 2011-07-12 Danio rerio
Danio rerio
7
(0 x 7)
1 6 by_platform
by_series
4 [E-MTAB-369] Transcription profiling by array of Xenopus laevis embryos at 15 different stages (GSE28390) [GeneChip] [X_laevis_2] Affymetrix Xenopus laevis Genome 2.0 Array (GPL10756) RIKEN Center for Developmental Biology 2011-04-05 Xenopus laevis
Xenopus laevis
979,050
(32,635 x 30)
30 by_platform
by_series
5 [E-MTAB-366] Transcription profiling by array of chicken embryos at 15 different stages (GSE28388) [GeneChip] [Chicken] Affymetrix Chicken Genome Array (GPL3213) RIKEN Center for Developmental Biology 2011-04-05 Gallus gallus
Gallus gallus
1,156,050
(38,535 x 30)
30 by_platform
by_series
6 [E-MTAB-308] Zebrafish gene 3 prime end pull down for genome annotation (GSE25023) [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) European Bioinformatics Institute 2010-10-29 Danio rerio
Danio rerio
7
(0 x 7)
1 1 4 1 by_platform
by_series
7 Zygotic gene activatory network in zebrafish is globally controlled by Pou5f1 SoxB1 enhancers (GSE39780) [HT Sequencing] Illumina Genome Analyzer IIx (Danio rerio) (GPL15583) Albert-Ludwigs-University Freiburg 2012-07-31 Danio rerio
Danio rerio
3
(0 x 3)
3 by_platform
by_series
8 Zygotic gene activatory network in zebrafish is globally controlled by Pou5f1 SoxB1 enhancers (GSE39780) [HT Sequencing] Illumina HiSeq 2000 (Danio rerio) (GPL14875) Albert-Ludwigs-University Freiburg 2012-07-31 Danio rerio
Danio rerio
1
(0 x 1)
1 by_platform
by_series
9 Zygotic expression of Exostosin1 (Ext1) is required for establishment of dorsal-ventral pattern in Xenopus (GSE51562) [GeneChip] [X_laevis_2] Affymetrix Xenopus laevis Genome 2.0 Array (GPL10756) University of Houston 2013-10-22 Xenopus laevis
Xenopus laevis
195,810
(32,635 x 6)
6 by_platform
by_series
10 Zoarces viviparus evaluation data (GSE14957) [Oligo Array] Zoarces viviparus validation microarray (GPL8222) University of Gothenburg 2009-02-23 Zoarces viviparus
Zoarces viviparus
124,992
(124,992 x 1)
1 by_platform
by_series
11 Zebrafish: Estrogen induced gene expression (GSE27707) [Oligo Array] Zf_16.5K_oligo_COMP_v3Apx (GPL2715) Genome Institute of Singapore 2011-03-07 Danio rerio
Danio rerio
165,120
(16,512 x 10)
10 by_platform
by_series
12 Zebrafish Zili- and Ziwi-interacting small RNAs (GSE12547) [HT Sequencing] Hubrecht Institute Zebrafish Zili- and Ziwi-interacting small RNAs (454 GS FLX system) (GPL7207) Hubrecht Institute 2008-08-26 Danio rerio
Danio rerio
1,497,144
(249,524 x 6)
4 2 by_platform
by_series
13 Zebrafish whole embryos at 36 hpf treated with DMSO or 5uM 11,12-EET (GSE39707) [GeneChip] [Zebrafish] Affymetrix Zebrafish Genome Array (GPL1319) Children's Hospital Boston 2012-07-27 Danio rerio
Danio rerio
93,702
(15,617 x 6)
6 by_platform
by_series
14 Zebrafish von Hippel-Lindau (vhl) tumor suppressor mutants compared to siblings at 7 dpf (GSE14866) [Oligo Array] Agilent-019161 D. rerio (Zebrafish) Oligo Microarray (V2) G2519F (Probe Name version) (GPL7301) Hubrecht Institute- KNAW and UMC Utrecht 2009-02-17 Danio rerio
Danio rerio
87,354
(43,677 x 2)
2 by_platform
by_series
15 Zebrafish transcriptomics in 24 and 36 hpf embryos after knockdown of glucocorticoid receptor translation (GSE50376) [Oligo Array] Agilent-019161 D. rerio (Zebrafish) Oligo Microarray (V2) G2519F (Probe Name version) (GPL7301) University of Waterloo 2013-08-27 Danio rerio
Danio rerio
524,124
(43,677 x 12)
12 by_platform
by_series
16 Zebrafish toxicogenomics and phenotypic analyses reveal molecular insights into bisphenol-A (BPA) early-life exposure toxicity. (GSE22634) [Oligo Array] Zebrafish 23K oligo_COMP-GIS_v4 (GPL10182) National University of Singapore 2010-06-30 Danio rerio
Danio rerio
418,176
(23,232 x 18)
18 by_platform
by_series
17 Zebrafish response to Mycobacterium marinum infection (Compugen series) (GSE8846) [Oligo Array] Zebrafish Oligonucleotide Library (Compugen) (GPL5720) University of North Carolina at Chapel Hill 2007-08-22 Danio rerio
Danio rerio
69,120
(17,280 x 4)
4 by_platform
by_series
18 Zebrafish response to Mycobacterium marinum infection (Affymetrix series) (GSE8327) [GeneChip] [Zebrafish] Affymetrix Zebrafish Genome Array (GPL1319) University of North Carolina at Chapel Hill 2007-06-28 Danio rerio
Danio rerio
140,553
(15,617 x 9)
9 by_platform
by_series
19 Zebrafish response to microbiota (GSE16857) [GeneChip] [Zebrafish] Affymetrix Zebrafish Genome Array (GPL1319) University of North Carolina at Chapel Hill 2009-06-26 Danio rerio
Danio rerio
93,702
(15,617 x 6)
6 by_platform
by_series
20 Zebrafish promoter microarrays identify actively transcribed embryonic genes (GSE4863) [Oligo Array] Zebrafish 44K oligo promoter array_Slide 1 of 2 (GPL3766) Whitehead Institute 2006-05-18 Danio rerio
Danio rerio
132,870
(44,290 x 3)
3 by_platform
by_series
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