| 1 |
GPL1319 |
[Zebrafish] Affymetrix Zebrafish Genome Array |
15,617 |
Affymetrix, Inc. |
2004-07-01 |
Affymetrix |
Danio rerio
 |
GeneChip |
in situ oligonucleotide, [Zebrafish] Affymetrix Zebrafish Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The Affymetrix GeneChip Zebrafish Genome Array can be used to study gene expression of over 14,900 Danio rerio transcripts. Sequence information for this array was selected from the following public data sources: RefSeq (July 2003), GenBank (release 136.0, June 2003), dbEST (July 2003), and UniGene (Build 54, June 2003). Probe sets on the array were designed with 16 oligonucleotide pairs to detect each transcript. This array was designed in collaboration with representative members of the Zebrafish community and the National Institutes of Health. Note: The DsRed probe set is provided with permission from BD Biosciences, and BD Biosciences grants users a limited license to utilize this probe set only on the Affymetrix array. Other uses of the probe set, or other DsRed sequence or sequences requires a license from BD Biosciences. Annotations derived from Affymetrix CSV file dated 6/23/2004 |
| 2 |
GPL16933 |
[ZebGene-1_0-st] Zebrafish Gene 1.0 ST Array [transcript (gene) version] |
75,212 |
Affymetrix Japan |
2013-03-29 |
Affymetrix |
Danio rerio
|
GeneChip |
in situ oligonucleotide, [ZebGene-1_0-st] Zebrafish Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Jan 29, 2013: annotation table updated with netaffx build 33 |
| 3 |
GPL10263 |
[X_tropicalis] Affymetrix Xenopus tropicalis Genome Array |
59,021 |
Affymetrix, Inc. |
2010-03-29 |
Affymetrix |
Xenopus (Silurana) tropicalis
 |
GeneChip |
in situ oligonucleotide, [X_tropicalis] Affymetrix Xenopus tropicalis Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This array was designed in close collaboration with the Xenopus research community as part of the Affymetrix® GeneChip Consortia Program. Sequences used in the design of the array were selected from the Xenopus tropicalis UniGene database (Build 30, July 2006), GenBank® mRNAs for Xenopus tropicalis (up to September 12, 2006), and predicted gene sets from both the DOE Joint Genome Institute (Xentr4 transcripts, file creation date August 17, 2005, download date May 25, 2006) and Ensembl (release 40, download date May 2006). |
| 4 |
GPL10756 |
[X_laevis_2] Affymetrix Xenopus laevis Genome 2.0 Array |
32,635 |
Affymetrix, Inc. |
2010-08-03 |
Affymetrix |
Xenopus laevis
 |
GeneChip |
in situ oligonucleotide, [X_laevis_2] Affymetrix Xenopus laevis Genome 2.0 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html |
| 5 |
GPL1318 |
[Xenopus_laevis] Affymetrix Xenopus laevis Genome Array |
15,611 |
Affymetrix, Inc. |
2004-06-30 |
Affymetrix |
Xenopus laevis
|
GeneChip |
in situ oligonucleotide, [Xenopus_laevis] Affymetrix Xenopus laevis Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The Affymetrix GeneChip Xenopus laevis Genome Array can be used to study gene expression of over 14,400 Xenopus laevis transcripts. Sequence information for this array was selected from the following public data sources: GenBank (release 135.0, April 2003), dbEST (June 2003), and UniGene (Build 36, June 2003). Probe sets on the array were designed with 16 oligonucleotide pairs to detect each transcript. This array was designed in collaboration with representative members of the Xenopus community and the National Institutes of Health. More information on the design of this array can be found at www.xenbase.org Note: The DsRed probe set is provided with permission from BD Biosciences, and BD Biosciences grants users a limited license to utilize this probe set only on the Affymetrix array. Other uses of the probe set, or other DsRed sequence or sequences requires a license from BD Biosciences. |
| 6 |
GPL10818 |
[UCDavis]-[Delta smelt]-[18240]-[V:1.2] |
18,240 |
University of California at Davis |
2010-08-18 |
UCDavis School of Veterinary Medicine:APC |
Hypomesus transpacificus
 |
cDNA Array |
spotted DNA/cDNA, [UCDavis]-[Delta smelt]-[18240]-[V:1.2], ONLY CLONES OF INTEREST HAVE BEEN SEQUENCED AND IDENTIFIED. |
| 7 |
GPL16788 |
[FinGene-1_0-st] Zebra Finch Gene 1.0 ST Array [transcript (gene) version] |
28,296 |
Affymetrix Japan |
2013-03-14 |
Affymetrix |
Taeniopygia guttata
 |
GeneChip |
in situ oligonucleotide, [FinGene-1_0-st] Zebra Finch Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Thu Oct 20 14:39:28 PDT 2011 #%chip_type=FinGene-1_0-st-v1 #%lib_set_name=FinGene-1_0-st #%lib_set_version=v1 #%genome-species=Taeniopygia guttata #%genome-version=taeGut1 #%genome-version-create_date=2008-07-00 #%annotation-version=design-time |
| 8 |
GPL3213 |
[Chicken] Affymetrix Chicken Genome Array |
38,535 |
Affymetrix, Inc. |
2005-11-30 |
Affymetrix |
Gallus gallus
 |
GeneChip |
in situ oligonucleotide, [Chicken] Affymetrix Chicken Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Sequence information for the GeneChip Chicken Genome Array can be used to study gene expression of 33,457 chicken and viral transcripts. Species covered include Gallus gallus (chicken) and 17 avian viruses. Sequence information for this array includes public content from GenBank®, UniGene (Build 18; 15 May 2004), and Ensembl (version 1, released May 2004). Probe sets on the array were designed with 11 oligonucleotide pairs to detect each transcript. |
| 9 |
GPL8222 |
Zoarces viviparus validation microarray |
124,992 |
University of Gothenburg |
2009-02-23 |
Department of Zoology, University of Gothenburg / Febit gmbh, Heidelberg, Germany |
Zoarces viviparus
 |
Oligo Array |
in situ oligonucleotide, Zoarces viviparus validation microarray, This microarray contains 117,316 probes used to evaluate the transcript assembly described in Kristiansson et al 2009. |
| 10 |
GPL2715 |
Zf_16.5K_oligo_COMP_v3Apx |
16,512 |
National University of Singapore |
2005-08-03 |
Genome Institute of Singapore |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zf_16.5K_oligo_COMP_v3Apx, This set includes 16416 oligo probes (60 mers) designed by Compugen-Sigma. Spotted long oligonucleotide array on glass |
| 11 |
GPL4737 |
Zebrafish Paired End DiTags |
663,674 |
Genome Institute Of Singapore |
2007-01-09 |
not applicable |
Danio rerio
|
Other |
other, Zebrafish Paired End DiTags, Paired End DiTags (PET) derived from 5 Zebrafish libraries. Used a DNA tag sequencing and mapping strategy called gene identification signature (GIS) analysis, in which 5' and 3' signatures of full-length cDNAs are accurately extracted into paired-end ditags (PETs) that are concatenated for efficient sequencing and mapped to genome sequences to demarcate the transcription boundaries of every gene. GIS analysis is potentially 30-fold more efficient than standard cDNA sequencing approaches for transcriptome characterization. Mappings based on Genome Build: Zv6 (March 2006) |
| 12 |
GPL5720 |
Zebrafish Oligonucleotide Library (Compugen) |
17,280 |
University of North Carolina at Chapel Hill |
2007-08-07 |
Compugen |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish Oligonucleotide Library (Compugen), This set of zebrafish oligonucleotides was designed by Compugen and synthesized by Sigma-Genosys. The set consists of 16,399 65-mer oligonucleotides representing 16,228 gene clusters and 171 control elements. Compugen and Sigma-Genosys no longer sell or support this product. Sequences are not for commercial use, copyright reserved to Compugen 2002. |
| 13 |
GPL7556 |
Zebrafish Oligonucleotide Library (Compugen) |
16,399 |
University of Oregon |
2008-11-04 |
Compugen |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish Oligonucleotide Library (Compugen), This set of zebrafish oligonucleotides was designed by Compugen and synthesized by Sigma-Genosys. The set consists of 16,399 65-mer oligonucleotides representing 16,228 gene clusters and 171 control elements. Compugen and Sigma-Genosys no longer sell or support this product. Sequences are not for commercial use, copyright reserved to Compugen 2002. |
| 14 |
GPL3721 |
Zebrafish Oligonucleotide Array (Compugen) |
16,399 |
University of Chicago |
2006-05-02 |
Compugen |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish Oligonucleotide Array (Compugen), The Compugen set of zebrafish oligonucleotides was designed by Compugen based on ESTs, mostly from the Washington University Zebrafish Genome Assemblies. Compugen no longer sell or support this product. Sequences are not for commercial use, copyright reserved to Compugen 2002. |
| 15 |
GPL1743 |
Zebrafish nucleotide array |
15,174 |
Leiden University |
2004-12-10 |
|
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish nucleotide array, Microarrays of the MWG 14k Zebrafish Oligonucleotide Set were produced using the facilities of the Leiden Genome Technology Center (http://www.lgtc.nl). Oligonucleotides were dissolved in 150mM phosphate buffer (pH 8.5) to a concentration of 20 µM. With Omnigrid 100 (Genemachines) oligonucleotides were spotted on Codelink activated slides (Amersham Biosciences) according to the Amersham Codelink protocol and as described in (‘t Hoen et al 2003 and Meijer et al 2004). Microarrays were spotted according to the MIAME guidelines with 15.532 unique zebrafish oligonucleotides from the MWG oligonucleotide set. Ambion’s arraycontrol oligonucleotides (8 sense oligos) and 3 custom designed oligonucleotides were spotted together with the MWG oligonucleotide set. Spotted Codelink activated slides were treated with blocking solution and washed according to the manufacturer’s instructions. |
| 16 |
GPL9074 |
Zebrafish custom Agilent temperature_cadmium microarray |
15,208 |
University of Antwerp |
2009-08-21 |
Agilent |
Danio rerio
|
Oligo Array |
in situ oligonucleotide, Zebrafish custom Agilent temperature_cadmium microarray, A custom cadmium and temperature specific 15k microarray was designed. For this purpose 16 Agilent zebrafish 44k full genome microarray (version V2, AMADID 019161, containing 43,604 unique probes) hybridizations were performed on a subsample of the test samples from a temperature experiment and a cadmium exposure (performed with the intention of comparing temperature and cadmium responses in zebrafish). Probes that were differentially expressed under these conditions were included in the custom design and supplemented with GO-annotated probes from the full genome microarray probe set. |
| 17 |
GPL10456 |
Zebrafish 8K cDNA array TKH |
8,064 |
University of Wisconsin Milwaukee |
2010-05-21 |
Medical College of Wisconsin microarray facility |
Danio rerio
|
cDNA Array |
spotted DNA/cDNA, Zebrafish 8K cDNA array TKH, |
| 18 |
GPL3767 |
Zebrafish 44K oligo promoter array_Slide 2 of 2 |
44,290 |
Whitehead Institute |
2006-05-15 |
Agilent Technology |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish 44K oligo promoter array_Slide 2 of 2, Microarrays were designed as described below and manufactured by Agilent Technologies (www.agilent.com). Further information on design can be found at http://jura.wi.mit.edu/bioc/gbell/zfish_chip/. The Whitehead zebrafish promoter chipsets were designed for large-scale chromatin immunoprecipitation using microarrays (ChIP chips). The chipsets represent the promoters of about 11,000 transcriptional units derived using transcript sequences from Refseq, Ensembl, Vega, ZGC, and the Zon Lab. The 2-chipset represents proximal promoters (-1500 nt to +500 nt from the transciptional start site [tss]) on two microarrays of the same density. Probes are spaced an average of 250 nt apart. |
| 19 |
GPL3766 |
Zebrafish 44K oligo promoter array_Slide 1 of 2 |
44,290 |
Whitehead Institute |
2006-05-15 |
Agilent Technology |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish 44K oligo promoter array_Slide 1 of 2, Microarrays were designed as described below and manufactured by Agilent Technologies (www.agilent.com). Further information on design can be found at http://jura.wi.mit.edu/bioc/gbell/zfish_chip/. The Whitehead zebrafish promoter chipsets were designed for large-scale chromatin immunoprecipitation using microarrays (ChIP chips). The chipsets represent the promoters of about 11,000 transcriptional units derived using transcript sequences from Refseq, Ensembl, Vega, ZGC, and the Zon Lab. The 2-chipset represents proximal promoters (-1500 nt to +500 nt from the transciptional start site [tss]) on two microarrays of the same density. Probes are spaced an average of 250 nt apart. |
| 20 |
GPL4609 |
Zebrafish 34K Oligo array |
35,328 |
nih |
2006-11-29 |
NHGRI Microarray Core facility |
Danio rerio
|
Oligo Array |
spotted oligonucleotide, Zebrafish 34K Oligo array, |