Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(743)		   Primates
(5)		   Rodents
(386)		   Mammals
(31)		   Vertebrates
(51)		   Invertebrates
(187)		   Plants
(209)		   Bacteria
(89)		   Viruses
(1)		   Phages
(0)		   Unclassified
(12)		   All
(1,715)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(6)		   Tiling Array
(1)		   cDNA Array
(11)		   Oligo Array
(20)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(13)		   Other
(0)		   All
(51)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Zebrafish (Danio rerio) 72hpf, WT control vs. MO-Prpf31 injected (GSE20424) [Oligo Array] GIS Zebrafish 22K oligonucleotide array (GPL10074) National University of Singapore 2010-02-19 Danio rerio
Danio rerio		 136,656
(22,776 x 6) 		6 by_platform
by_series
2 Transcriptome analysis of zebrafish mononuclear myogenic cells (zMNCs) during myogenic differentiation (GSE19754) [GeneChip] [Zebrafish] Affymetrix Zebrafish Genome Array (GPL1319) Boston Children's Hospital 2010-01-05 Danio rerio
Danio rerio		 499,744
(15,617 x 32) 		32 by_platform
by_series
3 Transcriptional Profiling of Host Gene Expression in Chicken Embryo Lung Cells Infected with Laryngotracheitis Virus (GSE20630) [Oligo Array] Chicken 44K custom Agilent microarray (2nd version) (GPL6413) University of Arkansas 2010-03-04 Gallus gallus
Gallus gallus		 525,636
(43,803 x 12) 		12 by_platform
by_series
4 Transcriptional profiling of embryonic zebrafish expressing a mutant TNNT2 (GSE20179) [Oligo Array] Agilent-019161 D. rerio (Zebrafish) Oligo Microarray (V2) G2519F (Feature Number version) (GPL6457) Massachusetts General Hospital 2010-02-03 Danio rerio
Danio rerio		 180,880
(45,220 x 4) 		4 by_platform
by_series
5 Traf6 function in the innate immune response of zebrafish embryos (GSE20310) [Oligo Array] LU/IBL_D.rerio_Agilent_44k_021626 (GPL10042) University of Amsterdam 2010-02-12 Danio rerio
Danio rerio		 1,051,272
(43,803 x 24) 		24 by_platform
by_series
6 Traf6 function in the innate immune response of zebrafish embryos (GSE21024) [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) AMC 2010-03-23 Danio rerio
Danio rerio		 4
(0 x 4) 		4 by_platform
by_series
7 The genome of a songbird (GSE19900) [Oligo Array] Duke Taeniopygia guttata 45K (GPL9856) Duke University Medical Center 2010-01-14 Taeniopygia guttata
Taeniopygia guttata		 2,068,574
(44,969 x 46) 		46 by_platform
by_series
8 The gene profile of zebrafish guanine binding protein-like 2 (Gnl2) mutant embryos versus wild-type embryos at 22 hours post-fertilization (GSE21134) [Oligo Array] Agilent-013223 D. rerio (Zebrafish) Oligo Microarray G2518A Option 001 (Feature Number version) (GPL2878) Hubrecht Institute 2010-03-30 Danio rerio
Danio rerio		 45,150
(22,575 x 2) 		2 by_platform
by_series
9 Systematic identification of genes involved in embyonic chicken muscle development (GSE20990) [GeneChip] Affymetrix Chicken Genome Array [GgChicken_ENTREZG10] (GPL10234) Peking University 2010-03-22 Gallus gallus
Gallus gallus		 299,880
(12,495 x 24) 		24 by_platform
by_series
10 Systematic analysis of miRNA transcriptome of skeletal muscle identifies novel miRNAs and differentially expressed miRNAs in divergent skeletal muscle growth rates of broiler and layer chickens (GSE20992) [GeneChip] Affymetrix Chicken Genome Array [GgChicken_ENTREZG10] (GPL10234) Peking University 2010-03-22 Gallus gallus
Gallus gallus		 299,880
(12,495 x 24) 		24 by_platform
by_series
11 Systematic analysis of miRNA transcriptome of skeletal muscle identifies novel miRNAs and differentially expressed miRNAs in divergent skeletal muscle growth rates of broiler and layer chickens (GSE20992) [Oligo Array] Peking University Chicken miRNA 4k array (GPL10225) Peking University 2010-03-22 Gallus gallus
Gallus gallus		 10,632
(1,772 x 6) 		6 by_platform
by_series
12 Systematic analysis of miRNA transcriptome of skeletal muscle identifies novel miRNAs and differentially expressed miRNAs in divergent skeletal muscle growth rates of broiler and layer chickens (GSE20992) [HT Sequencing] Illumina Genome Analyzer (Gallus gallus) (GPL10223) Peking University 2010-03-22 Gallus gallus
Gallus gallus		 2
(0 x 2) 		2 by_platform
by_series
13 Swimming down-regulates ovarian transcriptomic response of rainbow trout Oncorhynchus mykiss (GSE20131) [cDNA Array] UKU_trout_1.8K_v1 (GPL6154) Universitat de Barcelona 2010-02-01 Oncorhynchus mykiss
Oncorhynchus mykiss		 22,464
(11,232 x 2) 		2 by_platform
by_series
14 Sub-adult RDX Exposure, Whole Body Tissue Investigation (GSE21102) [Oligo Array] Agilent-019597 custom fathead minnow 60mer (8x15k) (GPL10259) US Army ERDC 2010-03-29 Pimephales promelas
Pimephales promelas		 366,432
(15,268 x 24) 		24 by_platform
by_series
15 Steady State Thermal Acclimation in the Eurythermal Goby fish, Gillichthys mirabilis (GSE20849) [cDNA Array] Gillichthys mirabilis cDNA microarray (Last Annotated 2/2010 by Cheryl A. Logan) (GPL10169) Stanford University 2010-03-12 Gillichthys mirabilis
Gillichthys mirabilis		 422,400
(19,200 x 22) 		22 by_platform
by_series
16 Stage-specific expression of TNFα regulates bad/bid-mediated apoptosis and RIP1/ROS-mediated secondary necrosis in Birnavirus-infected fish cells (GSE21077) [Oligo Array] MWG_Zebrafish_14K (GPL5182) Academia Sinica 2010-03-26 Danio rerio
Danio rerio		 168,804
(14,067 x 12) 		12 by_platform
by_series
17 Sex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds (GSE20035) [cDNA Array] Songbird Neurogenomics Initiative 20K Array (GPL9554) University of Illinois 2010-01-25 Taeniopygia guttata
Taeniopygia guttata		 967,680
(20,160 x 48) 		48 by_platform
by_series
18 Salvelinus Microarray experiment: selected line vs control line (GSE20490) [cDNA Array] cGRASP 32K (Salmonid) cDNA - Release Date 02/08 (GPL10096) University Laval 2010-02-23 Salvelinus fontinalis
Salvelinus fontinalis		 1,347,840
(33,696 x 40) 		40 by_platform
by_series
19 Rainbow trout red blood cells (RBCs): Control vs Heat shock, repeated samples from individuals (GSE21084) [cDNA Array] GRASP 16K version 2 (GPL2716) University of Ottawa 2010-03-26 Oncorhynchus mykiss
Oncorhynchus mykiss		 554,496
(17,328 x 32) 		32 by_platform
by_series
20 Probiotic-induced differential gene expression during Salmonella challenge in neonatal chicks (GSE19887) [Oligo Array] Arizona Gallus gallus 20.7K Oligo Array v1.0 (GPL6049) University of Maryland 2010-01-14 Gallus gallus
Gallus gallus		 675,840
(21,120 x 32) 		32 by_platform
by_series
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