Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Vertebrates
(18,263)

Invertebrates
(37,338)

Plants
(91,454)

SAGE RsaI
(0)

SAGE Sau3A
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

All
(18,263)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(1,158)

unclassified
(4,485)

all
(18,263)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM727519	TDRD1IPlong	9,924,201	Hubrecht Institute	2011-05-20	[HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319)	SRA	Danio rerio	testis	RNA obtained from immunoprecipitation with Tdrd1 antibody from zebrafish testis extract
2	GSM727524	ZiliIPTes	7,748,487	Hubrecht Institute	2011-05-20	[HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319)	SRA	Danio rerio	unclassified	source_name:RNA obtained from immunoprecipitation with Zili antibody title:ZiliIPTes description:Small RNA sequence data (RIP-Seq)
3	GSM475282	Xenopus-egg_Y12-associated small RNAs	3,886,632	Memorial Sloan Kettering Cancer Center	2009-11-24	[HT Sequencing] Illumina Genome Analyzer II (Xenopus (Silurana) tropicalis) (GPL9320)	SRA	Xenopus (Silurana) tropicalis	ovary	Xenopus-egg_Y12-associated small RNAs
4	GSM830244	hen1 mutant polyA	3,494,197	Hubrecht Institute	2011-11-09	[HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319)	SRA	Danio rerio	testis	testis
5	GSM830246	hen1 mutant ligation	3,041,843	Hubrecht Institute	2011-11-09	[HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319)	SRA	Danio rerio	testis	testis
6	GSM727520	TDRD1IPshort	2,761,702	Hubrecht Institute	2011-05-20	[HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319)	SRA	Danio rerio	testis	RNA obtained from immunoprecipitation with Tdrd1 antibody from zebrafish testis extract
7	GSM830247	wildtype ligation	2,541,184	Hubrecht Institute	2011-11-09	[HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319)	SRA	Danio rerio	testis	testis
8	GSM861785	kdrl:egfp-pos microRNA	2,435,707	Umass Medical School	2012-01-12	[HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164)	SRA	Danio rerio	unclassified	source_name:FACS-isolated kdrl:egfp-positive cells title:kdrl:egfp-pos microRNA description:GFPplus microRNA
9	GSM581033	ZF4_H3K4me3_Repl1	2,168,225	University of Oslo	2010-08-18	[Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835)	genomic	Danio rerio	unclassified	source_name:H3K4me3 ChIP DNA Input DNA from ZF4 cells title:ZF4_H3K4me3_Repl1
10	GSM581034	ZF4_H3K4me3_Repl2	2,168,225	University of Oslo	2010-08-18	[Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835)	genomic	Danio rerio	unclassified	source_name:H3K4me3 ChIP DNA Input DNA from ZF4 cells title:ZF4_H3K4me3_Repl2
11	GSM581035	ZF4_H3K27me3_Repl1	2,168,225	University of Oslo	2010-08-18	[Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835)	genomic	Danio rerio	unclassified	source_name:H3K27me3 ChIP DNA Input DNA from ZF4 cells title:ZF4_H3K27me3_Repl1
12	GSM581036	ZF4_H3K27me3_Repl2	2,168,225	University of Oslo	2010-08-18	[Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835)	genomic	Danio rerio	unclassified	source_name:H3K27me3 ChIP DNA Input DNA from ZF4 cells title:ZF4_H3K27me3_Repl2
13	GSM675174	MBT_H3K27me3 Repl1	2,168,225	University of Oslo	2011-02-14	[Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835)	genomic	Danio rerio	unclassified	source_name:MBT H3K27me3 ChIP DNA MBT H3K27me3 Input DNA title:MBT_H3K27me3 Repl1
14	GSM675175	MBT_H3K27me3 Repl2	2,168,225	University of Oslo	2011-02-14	[Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835)	genomic	Danio rerio	unclassified	source_name:MBT H3K27me3 ChIP DNA MBT H3K27me3 Input DNA title:MBT_H3K27me3 Repl2
15	GSM675176	MBT_H3K36me3 Repl1	2,168,225	University of Oslo	2011-02-14	[Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835)	genomic	Danio rerio	unclassified	source_name:MBT H3K36me3 ChIP DNA MBT H3K36me3 Input DNA title:MBT_H3K36me3 Repl1
16	GSM675177	MBT_H3K36me3 Repl2	2,168,225	University of Oslo	2011-02-14	[Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835)	genomic	Danio rerio	unclassified	source_name:MBT H3K36me3 ChIP DNA MBT H3K36me3 Input DNA title:MBT_H3K36me3 Repl2
17	GSM675178	MBT_H3K4me3 Repl1	2,168,225	University of Oslo	2011-02-14	[Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835)	genomic	Danio rerio	unclassified	source_name:MBT H3K4me3 ChIP DNA MBT H3K4me3 Input DNA title:MBT_H3K4me3 Repl1
18	GSM675179	MBT_H3K4me3 Repl2	2,168,225	University of Oslo	2011-02-14	[Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835)	genomic	Danio rerio	unclassified	source_name:MBT H3K4me3 ChIP DNA MBT H3K4me3 Input DNA title:MBT_H3K4me3 Repl2
19	GSM675180	MBT_H3K9me3 Repl1	2,168,225	University of Oslo	2011-02-14	[Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835)	genomic	Danio rerio	unclassified	source_name:MBT H3K9me3 ChIP DNA MBT H3K9me3 Input DNA title:MBT_H3K9me3 Repl1
20	GSM675181	MBT_H3K9me3 Repl2	2,168,225	University of Oslo	2011-02-14	[Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835)	genomic	Danio rerio	unclassified	source_name:MBT H3K9me3 ChIP DNA MBT H3K9me3 Input DNA title:MBT_H3K9me3 Repl2

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