Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(16,283)		   Primates
(80)		   Rodents
(6,896)		   Mammals
(298)		   Vertebrates
(469)		   Invertebrates
(517)		   Plants
(5,385)		   Bacteria
(1,328)		   Viruses
(9)		   Phages
(0)		   Unclassified
(100)		   All
(31,365)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(228)		   Tiling Array
(0)		   cDNA Array
(26)		   Oligo Array
(210)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(5)		   Other
(0)		   All
(469)		  
  brain
(91)		   blood
(11)		   connective
(16)		   reproductive
(32)		   muscular
(1)		   digestive
(6)		   liver
(8)		   lung
(21)		   urinary
(10)		   endo/exo-crine
(2)		   embryo
(69)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(88)		   unclassified
(114)		   all
(469)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM942037 NG993_1-1_HF 170,000 Kyoto University 2012-06-04 [Oligo Array] Agilent customized Chicken CGH Microarray 4x180K (GPL15646) genomic Gallus gallus
Gallus gallus		 unclassified source_name:high fear Low fear title:NG993_1-1_HF
2 GSM942038 NG4692_2-1_HF 170,000 Kyoto University 2012-06-04 [Oligo Array] Agilent customized Chicken CGH Microarray 4x180K (GPL15646) genomic Gallus gallus
Gallus gallus		 unclassified source_name:high fear Low fear title:NG4692_2-1_HF
3 GSM942039 NG3557_3-1_HF 170,000 Kyoto University 2012-06-04 [Oligo Array] Agilent customized Chicken CGH Microarray 4x180K (GPL15646) genomic Gallus gallus
Gallus gallus		 unclassified source_name:high fear Low fear title:NG3557_3-1_HF
4 GSM942040 NG3597_4-1_HF 170,000 Kyoto University 2012-06-04 [Oligo Array] Agilent customized Chicken CGH Microarray 4x180K (GPL15646) genomic Gallus gallus
Gallus gallus		 unclassified source_name:high fear Low fear title:NG3597_4-1_HF
5 GSM518294 zebrafish embryo 13.5h after fertilization 113,931 Shinshu University 2010-03-05 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 embryo zebrafish developing embryo
6 GSM518293 zebrafish embryo 12h after fertilization 106,953 Shinshu University 2010-03-05 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 embryo zebrafish developing embryo
7 GSM518295 zebrafish embryo 15h after fertilization 105,314 Shinshu University 2010-03-05 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 embryo zebrafish developing embryo
8 GSM518292 zebrafish embryo 10.5h after fertilization 85,922 Shinshu University 2010-03-05 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 embryo zebrafish developing embryo
9 GSM518296 zebrafish embryo 16.5h after fertilization 82,625 Shinshu University 2010-03-05 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 embryo zebrafish developing embryo
10 GSM946839 type A spermatogonia 55,988 Tokyo University of Marine Science and Technology 2012-06-11 [Oligo Array] Agilent-034067 Oncorhynchus mykiss RTG_Array_Ver.1 032182 (GPL15686) RNA Oncorhynchus mykiss
Oncorhynchus mykiss		 testis type A spermatogonia
11 GSM946840 testicular somatic cell 55,988 Tokyo University of Marine Science and Technology 2012-06-11 [Oligo Array] Agilent-034067 Oncorhynchus mykiss RTG_Array_Ver.1 032182 (GPL15686) RNA Oncorhynchus mykiss
Oncorhynchus mykiss		 testis testicular somatic cell
12 GSM912887 ATF6DKO-rep1 45,220 Graduate School of Science, Kyoto University 2012-04-11 [Oligo Array] Agilent-030568 Custom Oryzias latipes microarray (UT2010) (GPL15425) RNA Oryzias latipes
Oryzias latipes		 unclassified source_name:ATF6 DKO title:ATF6DKO-rep1
13 GSM912888 ATF6DKO-rep2 45,220 Graduate School of Science, Kyoto University 2012-04-11 [Oligo Array] Agilent-030568 Custom Oryzias latipes microarray (UT2010) (GPL15425) RNA Oryzias latipes
Oryzias latipes		 unclassified source_name:ATF6 DKO title:ATF6DKO-rep2
14 GSM912889 Control-rep1 45,220 Graduate School of Science, Kyoto University 2012-04-11 [Oligo Array] Agilent-030568 Custom Oryzias latipes microarray (UT2010) (GPL15425) RNA Oryzias latipes
Oryzias latipes		 unclassified source_name:Control title:Control-rep1
15 GSM912890 Control-rep2 45,220 Graduate School of Science, Kyoto University 2012-04-11 [Oligo Array] Agilent-030568 Custom Oryzias latipes microarray (UT2010) (GPL15425) RNA Oryzias latipes
Oryzias latipes		 unclassified source_name:Control title:Control-rep2
16 GSM436844 DT40 (- IAA control) 42,034 Osaka University 2009-08-05 [Oligo Array] Agilent-015068 Chicken Gene Expression Microarray 4x44k (Feature Number version) (GPL8764) RNA Gallus gallus
Gallus gallus		 unclassified source_name:DT40 cells title:DT40 (- IAA control) description:Gene expression after 6 hours
17 GSM436845 DT40 (+500µM IAA) 42,034 Osaka University 2009-08-05 [Oligo Array] Agilent-015068 Chicken Gene Expression Microarray 4x44k (Feature Number version) (GPL8764) RNA Gallus gallus
Gallus gallus		 unclassified source_name:DT40 cells title:DT40 (+500µM IAA) description:Gene expression after 6 hours
18 GSM436846 DT40 expressing OsTIR1 (-IAA control) 42,034 Osaka University 2009-08-05 [Oligo Array] Agilent-015068 Chicken Gene Expression Microarray 4x44k (Feature Number version) (GPL8764) RNA Gallus gallus
Gallus gallus		 unclassified source_name:DT40 cells expressing OsTIR1 title:DT40 expressing OsTIR1 (-IAA control) description:Gene expression after 6 hours
19 GSM436847 DT40 expressing OsTIR1 (+500µMIAA) 42,034 Osaka University 2009-08-05 [Oligo Array] Agilent-015068 Chicken Gene Expression Microarray 4x44k (Feature Number version) (GPL8764) RNA Gallus gallus
Gallus gallus		 unclassified source_name:DT40 cells expressing OsTIR1 title:DT40 expressing OsTIR1 (+500µMIAA) description:Gene expression after 6 hours
20 GSM769234 females imprinted vs. dark reared 03_P1D-F vs P1T-F 42,034 Teikyo University 2011-07-29 [Oligo Array] Agilent-015068 Chicken Gene Expression Microarray 4x44k (Feature Number version) (GPL8764) RNA Gallus gallus
Gallus gallus		 cerebrum female newly-hatched chick brains trained for 1hr female newly-hatched chick brains, dark-reared
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