Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(24,627)
  Primates
(119)
  Rodents
(6,329)
  Mammals
(918)
  Vertebrates
(516)
  Invertebrates
(2,151)
  Plants
(2,843)
  Bacteria
(1,351)
  Viruses
(0)
  Phages
(0)
  Unclassified
(138)
  All
(39,084)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(81)
  Tiling Array
(4)
  cDNA Array
(122)
  Oligo Array
(268)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(41)
  Other
(0)
  All
(516)
 
  brain
(26)
  blood
(58)
  connective
(0)
  reproductive
(28)
  muscular
(41)
  digestive
(0)
  liver
(95)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(74)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(12)
  unclassified
(182)
  all
(516)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM564428 1 cell 0 Genome Institute of Singapore 2010-07-08 [HT Sequencing] AB SOLiD System 3.0 (Danio rerio) (GPL10658) SRA Danio rerio
Danio rerio
embryo developing embryos
2 GSM564429 16/32 cells 0 Genome Institute of Singapore 2010-07-08 [HT Sequencing] AB SOLiD System 3.0 (Danio rerio) (GPL10658) SRA Danio rerio
Danio rerio
embryo developing embryos
3 GSM564430 128/256 cells 0 Genome Institute of Singapore 2010-07-08 [HT Sequencing] AB SOLiD System 3.0 (Danio rerio) (GPL10658) SRA Danio rerio
Danio rerio
embryo developing embryos
4 GSM564431 3.5hpf 0 Genome Institute of Singapore 2010-07-08 [HT Sequencing] AB SOLiD System 3.0 (Danio rerio) (GPL10658) SRA Danio rerio
Danio rerio
embryo developing embryos
5 GSM564432 5.3hpf 0 Genome Institute of Singapore 2010-07-08 [HT Sequencing] AB SOLiD System 3.0 (Danio rerio) (GPL10658) SRA Danio rerio
Danio rerio
embryo developing embryos
6 GSM586305 Original ZFNs DD/RR 20pg monster stage_1_off_target_seq_barcode_AT 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 48 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix raw reads, no quality score
7 GSM586306 original ZFNs DD/RR 10pg monster stage_1_off_target_seq_barcode_CG 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 48 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix raw reads, no quality score
8 GSM586307 New ZFNs DD/RR 20pg monster stage_1_off_target_seq_barcode_CT 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 48 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix raw reads, no quality score
9 GSM586308 Original ZFNs DD/RR 10pg normal stage_1_off_target_seq_barcode_GG 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 48 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix raw reads, no quality score
10 GSM586309 New ZFNs DD/RR 20pg normal stage_1_off_target_seq_barcode_GT 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 48 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix raw reads, no quality score
11 GSM586310 New ZFNs DD/RR 10pg normal stage_1_off_target_seq_barcode_TG 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 48 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix raw reads, no quality score
12 GSM586311 Uninjected stage_1_off_target_seq_barcode_TT 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 48 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix raw reads, no quality score
13 GSM586312 Uninjected stage_2_off_target_seq_barcode_AA 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 94 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix n/a
14 GSM586313 New ZFNs DD/RR 10pg normal stage_2_off_target_seq_barcode_AC 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 94 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix n/a
15 GSM586314 Original ZFNs DD/RR 10pg monster stage_2_off_target_seq_barcode_AG 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 94 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix n/a
16 GSM586315 Original ZFNs El/KK 100pg normal stage_2_off_target_seq_barcode_AT 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 94 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix n/a
17 GSM586316 Original ZFNs DD/RR 10pg monster stage_2_off_target_seq_barcode_CA 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 94 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix n/a
18 GSM586317 New ZFNs DD/RR 20pg monster stage_2_off_target_seq_barcode_CC 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 94 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix n/a
19 GSM586318 Original ZFNs DD/RR 20pg monster stage_2_off_target_seq_barcode_CG 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 94 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix n/a
20 GSM586319 Original ZFNs EL/KK 100pg monster stage_2_off_target_seq_barcode_CT 0 UMass Medical School 2010-08-23 [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) SRA Danio rerio
Danio rerio
embryo 94 off-target sites and the target site were PCR amplified using the genomic DNA from the ZFN treated embryos. The different ZFN treatments were barcoded and sequences belonging to different sites can be binned using 9 bp unique prefix n/a
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