Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(987)
  Primates
(0)
  Rodents
(490)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(196)
  Bacteria
(227)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(2,852)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(9)
  Tiling Array
(0)
  cDNA Array
(129)
  Oligo Array
(41)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(28)
  Other
(0)
  All
(0)
 
  brain
(18)
  blood
(1)
  connective
(0)
  reproductive
(81)
  muscular
(0)
  digestive
(10)
  liver
(21)
  lung
(0)
  urinary
(30)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(46)
  all
(0)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM417897 testis_GONSL21 10,752 NUI Galway 2009-06-17 [cDNA Array] NUIG_salmon_5K array_V2.0 (full array layout) (GPL8731) RNA Salmo salar
Salmo salar
testis testis, pool of 10, non-precocious parr, NP2 testis, pool of 4, precocious parr, PG1
2 GSM417972 testis_GONSL26 10,752 NUI Galway 2009-06-17 [cDNA Array] NUIG_salmon_5K array_V2.0 (full array layout) (GPL8731) RNA Salmo salar
Salmo salar
testis testis_precocious_pool of 4_PG1 testes_non-precocious_pool of 10_NP3
3 GSM417984 testis_GONSL27 10,752 NUI Galway 2009-06-17 [cDNA Array] NUIG_salmon_5K array_V2.0 (full array layout) (GPL8731) RNA Salmo salar
Salmo salar
testis testis_nonprecocious_pool of 10_NP3 testis_precocious_pool of 4_PG2
4 GSM418011 testes_GONSL28 10,752 NUI Galway 2009-06-17 [cDNA Array] NUIG_salmon_5K array_V2.0 (full array layout) (GPL8731) RNA Salmo salar
Salmo salar
testis testis_precocious_pool of 4_PG2 testis_non-precocious_pool of 10_NP2
5 GSM418012 testes_GONSL29 10,752 NUI Galway 2009-06-17 [cDNA Array] NUIG_salmon_5K array_V2.0 (full array layout) (GPL8731) RNA Salmo salar
Salmo salar
testis testis_precocious_pool of 4_PG3 testis_non-precocious_pool of 10_NP3
6 GSM418013 testis_GONSL42 10,752 NUI Galway 2009-06-17 [cDNA Array] NUIG_salmon_5K array_V2.0 (full array layout) (GPL8731) RNA Salmo salar
Salmo salar
testis testis_non-precocious_pool of 10_NP1 testis_precocious_pool of 4_PG3
7 GSM418014 testis_GONSL33 10,752 NUI Galway 2009-06-17 [cDNA Array] NUIG_salmon_5K array_V2.0 (full array layout) (GPL8731) RNA Salmo salar
Salmo salar
testis testis_precocious_pool of 4_PG3 testis_non-precocious_pool of 10_NP2
8 GSM418015 testis_GONSL36 10,752 NUI Galway 2009-06-17 [cDNA Array] NUIG_salmon_5K array_V2.0 (full array layout) (GPL8731) RNA Salmo salar
Salmo salar
testis testis_precocious_pool of 4_PG2 testis_non-precocious_pool of 10_NP1
9 GSM418016 testis_GONSL34 10,752 NUI Galway 2009-06-17 [cDNA Array] NUIG_salmon_5K array_V2.0 (full array layout) (GPL8731) RNA Salmo salar
Salmo salar
testis testis_precocious_pool of 4_PG1 testis_non-precocious_pool of 10_NP1
10 GSM417558 L6S1F 38,976 NUI Galway 2009-06-16 [cDNA Array] AQUAFIRST_seabream_18K_Ver1 (GPL8467) RNA Sparus aurata
Sparus aurata
testis The two cDNA samples per slide (e.g. reference cDNA Cy3 labelled and experimental cDNA Cy5 labelled) were mixed and appropriate blockers were added (sheared salmon sperm genomic DNA, poly dA). The cDNA mixture was concentrated by precipitation with 3M NaOAC and absolute ethanol at -20oC for 30 min. followed by centrifugation at 12500 x g for 30 min. Following removal of supernatant, the cDNA pellet was resuspended in 70 microl slide hyb buffer #1 (Ambion) and was then denatured at 95oC for 2 min. Slides were placed in Pre-Hyb solution (3xSSC, 0.1 % BSA, 0.1 % SDS) in 50 ml Sarsted tubes pre-warmed @ 42 oC and pre-hybed @ 42 oC for 30 min. Slides were rinsed 3 times in water and spun dry for 3 min @ 1600rpm. The hybridisation mixture was then added to the pre-hybed microarray slide using a coverslip (Erie Scientific). Hybridisation was performed in a Genetix hybidisation chamber (Genetix, UK) at 42 oC for 16 h. Following hybridisation the slides were washed (2 x 5 min. washes using 0.2XSSC/0.1% SDS and 2 x 5 min. washes using 0.2XSSC) using an Advawash automatic washing station (Advalytix).
11 GSM417559 L6S1R 38,976 NUI Galway 2009-06-16 [cDNA Array] AQUAFIRST_seabream_18K_Ver1 (GPL8467) RNA Sparus aurata
Sparus aurata
testis The two cDNA samples per slide (e.g. reference cDNA Cy3 labelled and experimental cDNA Cy5 labelled) were mixed and appropriate blockers were added (sheared salmon sperm genomic DNA, poly dA). The cDNA mixture was concentrated by precipitation with 3M NaOAC and absolute ethanol at -20oC for 30 min. followed by centrifugation at 12500 x g for 30 min. Following removal of supernatant, the cDNA pellet was resuspended in 70 microl slide hyb buffer #1 (Ambion) and was then denatured at 95oC for 2 min. Slides were placed in Pre-Hyb solution (3xSSC, 0.1 % BSA, 0.1 % SDS) in 50 ml Sarsted tubes pre-warmed @ 42 oC and pre-hybed @ 42 oC for 30 min. Slides were rinsed 3 times in water and spun dry for 3 min @ 1600rpm. The hybridisation mixture was then added to the pre-hybed microarray slide using a coverslip (Erie Scientific). Hybridisation was performed in a Genetix hybidisation chamber (Genetix, UK) at 42 oC for 16 h. Following hybridisation the slides were washed (2 x 5 min. washes using 0.2XSSC/0.1% SDS and 2 x 5 min. washes using 0.2XSSC) using an Advawash automatic washing station (Advalytix).
12 GSM417560 L6S2F 38,976 NUI Galway 2009-06-16 [cDNA Array] AQUAFIRST_seabream_18K_Ver1 (GPL8467) RNA Sparus aurata
Sparus aurata
testis The two cDNA samples per slide (e.g. reference cDNA Cy3 labelled and experimental cDNA Cy5 labelled) were mixed and appropriate blockers were added (sheared salmon sperm genomic DNA, poly dA). The cDNA mixture was concentrated by precipitation with 3M NaOAC and absolute ethanol at -20oC for 30 min. followed by centrifugation at 12500 x g for 30 min. Following removal of supernatant, the cDNA pellet was resuspended in 70 microl slide hyb buffer #1 (Ambion) and was then denatured at 95oC for 2 min. Slides were placed in Pre-Hyb solution (3xSSC, 0.1 % BSA, 0.1 % SDS) in 50 ml Sarsted tubes pre-warmed @ 42 oC and pre-hybed @ 42 oC for 30 min. Slides were rinsed 3 times in water and spun dry for 3 min @ 1600rpm. The hybridisation mixture was then added to the pre-hybed microarray slide using a coverslip (Erie Scientific). Hybridisation was performed in a Genetix hybidisation chamber (Genetix, UK) at 42 oC for 16 h. Following hybridisation the slides were washed (2 x 5 min. washes using 0.2XSSC/0.1% SDS and 2 x 5 min. washes using 0.2XSSC) using an Advawash automatic washing station (Advalytix).
13 GSM417561 L6S2R 38,976 NUI Galway 2009-06-16 [cDNA Array] AQUAFIRST_seabream_18K_Ver1 (GPL8467) RNA Sparus aurata
Sparus aurata
testis The two cDNA samples per slide (e.g. reference cDNA Cy3 labelled and experimental cDNA Cy5 labelled) were mixed and appropriate blockers were added (sheared salmon sperm genomic DNA, poly dA). The cDNA mixture was concentrated by precipitation with 3M NaOAC and absolute ethanol at -20oC for 30 min. followed by centrifugation at 12500 x g for 30 min. Following removal of supernatant, the cDNA pellet was resuspended in 70 microl slide hyb buffer #1 (Ambion) and was then denatured at 95oC for 2 min. Slides were placed in Pre-Hyb solution (3xSSC, 0.1 % BSA, 0.1 % SDS) in 50 ml Sarsted tubes pre-warmed @ 42 oC and pre-hybed @ 42 oC for 30 min. Slides were rinsed 3 times in water and spun dry for 3 min @ 1600rpm. The hybridisation mixture was then added to the pre-hybed microarray slide using a coverslip (Erie Scientific). Hybridisation was performed in a Genetix hybidisation chamber (Genetix, UK) at 42 oC for 16 h. Following hybridisation the slides were washed (2 x 5 min. washes using 0.2XSSC/0.1% SDS and 2 x 5 min. washes using 0.2XSSC) using an Advawash automatic washing station (Advalytix).
14 GSM417562 L6S3F 38,976 NUI Galway 2009-06-16 [cDNA Array] AQUAFIRST_seabream_18K_Ver1 (GPL8467) RNA Sparus aurata
Sparus aurata
testis The two cDNA samples per slide (e.g. reference cDNA Cy3 labelled and experimental cDNA Cy5 labelled) were mixed and appropriate blockers were added (sheared salmon sperm genomic DNA, poly dA). The cDNA mixture was concentrated by precipitation with 3M NaOAC and absolute ethanol at -20oC for 30 min. followed by centrifugation at 12500 x g for 30 min. Following removal of supernatant, the cDNA pellet was resuspended in 70 microl slide hyb buffer #1 (Ambion) and was then denatured at 95oC for 2 min. Slides were placed in Pre-Hyb solution (3xSSC, 0.1 % BSA, 0.1 % SDS) in 50 ml Sarsted tubes pre-warmed @ 42 oC and pre-hybed @ 42 oC for 30 min. Slides were rinsed 3 times in water and spun dry for 3 min @ 1600rpm. The hybridisation mixture was then added to the pre-hybed microarray slide using a coverslip (Erie Scientific). Hybridisation was performed in a Genetix hybidisation chamber (Genetix, UK) at 42 oC for 16 h. Following hybridisation the slides were washed (2 x 5 min. washes using 0.2XSSC/0.1% SDS and 2 x 5 min. washes using 0.2XSSC) using an Advawash automatic washing station (Advalytix).
15 GSM417563 L6S3R 38,976 NUI Galway 2009-06-16 [cDNA Array] AQUAFIRST_seabream_18K_Ver1 (GPL8467) RNA Sparus aurata
Sparus aurata
testis The two cDNA samples per slide (e.g. reference cDNA Cy3 labelled and experimental cDNA Cy5 labelled) were mixed and appropriate blockers were added (sheared salmon sperm genomic DNA, poly dA). The cDNA mixture was concentrated by precipitation with 3M NaOAC and absolute ethanol at -20oC for 30 min. followed by centrifugation at 12500 x g for 30 min. Following removal of supernatant, the cDNA pellet was resuspended in 70 microl slide hyb buffer #1 (Ambion) and was then denatured at 95oC for 2 min. Slides were placed in Pre-Hyb solution (3xSSC, 0.1 % BSA, 0.1 % SDS) in 50 ml Sarsted tubes pre-warmed @ 42 oC and pre-hybed @ 42 oC for 30 min. Slides were rinsed 3 times in water and spun dry for 3 min @ 1600rpm. The hybridisation mixture was then added to the pre-hybed microarray slide using a coverslip (Erie Scientific). Hybridisation was performed in a Genetix hybidisation chamber (Genetix, UK) at 42 oC for 16 h. Following hybridisation the slides were washed (2 x 5 min. washes using 0.2XSSC/0.1% SDS and 2 x 5 min. washes using 0.2XSSC) using an Advawash automatic washing station (Advalytix).
16 GSM417564 L6S4F 38,976 NUI Galway 2009-06-16 [cDNA Array] AQUAFIRST_seabream_18K_Ver1 (GPL8467) RNA Sparus aurata
Sparus aurata
testis The two cDNA samples per slide (e.g. reference cDNA Cy3 labelled and experimental cDNA Cy5 labelled) were mixed and appropriate blockers were added (sheared salmon sperm genomic DNA, poly dA). The cDNA mixture was concentrated by precipitation with 3M NaOAC and absolute ethanol at -20oC for 30 min. followed by centrifugation at 12500 x g for 30 min. Following removal of supernatant, the cDNA pellet was resuspended in 70 microl slide hyb buffer #1 (Ambion) and was then denatured at 95oC for 2 min. Slides were placed in Pre-Hyb solution (3xSSC, 0.1 % BSA, 0.1 % SDS) in 50 ml Sarsted tubes pre-warmed @ 42 oC and pre-hybed @ 42 oC for 30 min. Slides were rinsed 3 times in water and spun dry for 3 min @ 1600rpm. The hybridisation mixture was then added to the pre-hybed microarray slide using a coverslip (Erie Scientific). Hybridisation was performed in a Genetix hybidisation chamber (Genetix, UK) at 42 oC for 16 h. Following hybridisation the slides were washed (2 x 5 min. washes using 0.2XSSC/0.1% SDS and 2 x 5 min. washes using 0.2XSSC) using an Advawash automatic washing station (Advalytix).
17 GSM417565 L6S4R 38,976 NUI Galway 2009-06-16 [cDNA Array] AQUAFIRST_seabream_18K_Ver1 (GPL8467) RNA Sparus aurata
Sparus aurata
testis The two cDNA samples per slide (e.g. reference cDNA Cy3 labelled and experimental cDNA Cy5 labelled) were mixed and appropriate blockers were added (sheared salmon sperm genomic DNA, poly dA). The cDNA mixture was concentrated by precipitation with 3M NaOAC and absolute ethanol at -20oC for 30 min. followed by centrifugation at 12500 x g for 30 min. Following removal of supernatant, the cDNA pellet was resuspended in 70 microl slide hyb buffer #1 (Ambion) and was then denatured at 95oC for 2 min. Slides were placed in Pre-Hyb solution (3xSSC, 0.1 % BSA, 0.1 % SDS) in 50 ml Sarsted tubes pre-warmed @ 42 oC and pre-hybed @ 42 oC for 30 min. Slides were rinsed 3 times in water and spun dry for 3 min @ 1600rpm. The hybridisation mixture was then added to the pre-hybed microarray slide using a coverslip (Erie Scientific). Hybridisation was performed in a Genetix hybidisation chamber (Genetix, UK) at 42 oC for 16 h. Following hybridisation the slides were washed (2 x 5 min. washes using 0.2XSSC/0.1% SDS and 2 x 5 min. washes using 0.2XSSC) using an Advawash automatic washing station (Advalytix).
18 GSM417566 L6S5F 38,976 NUI Galway 2009-06-16 [cDNA Array] AQUAFIRST_seabream_18K_Ver1 (GPL8467) RNA Sparus aurata
Sparus aurata
testis The two cDNA samples per slide (e.g. reference cDNA Cy3 labelled and experimental cDNA Cy5 labelled) were mixed and appropriate blockers were added (sheared salmon sperm genomic DNA, poly dA). The cDNA mixture was concentrated by precipitation with 3M NaOAC and absolute ethanol at -20oC for 30 min. followed by centrifugation at 12500 x g for 30 min. Following removal of supernatant, the cDNA pellet was resuspended in 70 microl slide hyb buffer #1 (Ambion) and was then denatured at 95oC for 2 min. Slides were placed in Pre-Hyb solution (3xSSC, 0.1 % BSA, 0.1 % SDS) in 50 ml Sarsted tubes pre-warmed @ 42 oC and pre-hybed @ 42 oC for 30 min. Slides were rinsed 3 times in water and spun dry for 3 min @ 1600rpm. The hybridisation mixture was then added to the pre-hybed microarray slide using a coverslip (Erie Scientific). Hybridisation was performed in a Genetix hybidisation chamber (Genetix, UK) at 42 oC for 16 h. Following hybridisation the slides were washed (2 x 5 min. washes using 0.2XSSC/0.1% SDS and 2 x 5 min. washes using 0.2XSSC) using an Advawash automatic washing station (Advalytix).
19 GSM417567 L6S5R 38,976 NUI Galway 2009-06-16 [cDNA Array] AQUAFIRST_seabream_18K_Ver1 (GPL8467) RNA Sparus aurata
Sparus aurata
testis The two cDNA samples per slide (e.g. reference cDNA Cy3 labelled and experimental cDNA Cy5 labelled) were mixed and appropriate blockers were added (sheared salmon sperm genomic DNA, poly dA). The cDNA mixture was concentrated by precipitation with 3M NaOAC and absolute ethanol at -20oC for 30 min. followed by centrifugation at 12500 x g for 30 min. Following removal of supernatant, the cDNA pellet was resuspended in 70 microl slide hyb buffer #1 (Ambion) and was then denatured at 95oC for 2 min. Slides were placed in Pre-Hyb solution (3xSSC, 0.1 % BSA, 0.1 % SDS) in 50 ml Sarsted tubes pre-warmed @ 42 oC and pre-hybed @ 42 oC for 30 min. Slides were rinsed 3 times in water and spun dry for 3 min @ 1600rpm. The hybridisation mixture was then added to the pre-hybed microarray slide using a coverslip (Erie Scientific). Hybridisation was performed in a Genetix hybidisation chamber (Genetix, UK) at 42 oC for 16 h. Following hybridisation the slides were washed (2 x 5 min. washes using 0.2XSSC/0.1% SDS and 2 x 5 min. washes using 0.2XSSC) using an Advawash automatic washing station (Advalytix).
20 GSM417568 L72C1F 38,976 NUI Galway 2009-06-16 [cDNA Array] AQUAFIRST_seabream_18K_Ver1 (GPL8467) RNA Sparus aurata
Sparus aurata
testis The two cDNA samples per slide (e.g. reference cDNA Cy3 labelled and experimental cDNA Cy5 labelled) were mixed and appropriate blockers were added (sheared salmon sperm genomic DNA, poly dA). The cDNA mixture was concentrated by precipitation with 3M NaOAC and absolute ethanol at -20oC for 30 min. followed by centrifugation at 12500 x g for 30 min. Following removal of supernatant, the cDNA pellet was resuspended in 70 microl slide hyb buffer #1 (Ambion) and was then denatured at 95oC for 2 min. Slides were placed in Pre-Hyb solution (3xSSC, 0.1 % BSA, 0.1 % SDS) in 50 ml Sarsted tubes pre-warmed @ 42 oC and pre-hybed @ 42 oC for 30 min. Slides were rinsed 3 times in water and spun dry for 3 min @ 1600rpm. The hybridisation mixture was then added to the pre-hybed microarray slide using a coverslip (Erie Scientific). Hybridisation was performed in a Genetix hybidisation chamber (Genetix, UK) at 42 oC for 16 h. Following hybridisation the slides were washed (2 x 5 min. washes using 0.2XSSC/0.1% SDS and 2 x 5 min. washes using 0.2XSSC) using an Advawash automatic washing station (Advalytix).
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