Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,761)		   Primates
(39)		   Rodents
(1,779)		   Mammals
(312)		   Vertebrates
(411)		   Invertebrates
(1,032)		   Plants
(2,239)		   Bacteria
(1,690)		   Viruses
(78)		   Phages
(8)		   Unclassified
(430)		   All
(11,831)		  
  SAGE NlaIII
(9)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(10)		   Tiling Array
(10)		   cDNA Array
(79)		   Oligo Array
(227)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(71)		   Other
(1)		   All
(411)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9786 Fundulus heteroclitus cDNA-based embryo microarray 15,658 Université Bordeaux 1 2009-12-11 Max Planck Institute Fundulus heteroclitus
Fundulus heteroclitus		 cDNA Array spotted DNA/cDNA, Fundulus heteroclitus cDNA-based embryo microarray, Reference = Cerdà, J., Tingaud-Sequeira A., Lozano J., Otero D., Zapater C., Beck A., Kuhl H., Kreutzberger J., Kube M., Reinhardt R. Transcriptome analysis of killifish embryos.
2 GPL966 Salmonid 3600 - Feb 17 2003 8,736 University of Wisconsin - Milwaukee 2004-01-28 Oncorhynchus mykiss,Salmo salar
Oncorhynchus mykiss,Salmo salar		 cDNA Array spotted DNA/cDNA, Salmonid 3600 - Feb 17 2003, GRASP ~3600 gene salmonid cDNA microarray Keywords = Atlantic salmon Keywords = rainbow trout Keywords = salmonid
3 GPL9554 Songbird Neurogenomics Initiative 20K Array 20,160 University of Illinois 2009-11-10 University of Illinois, Functional Genomics Lab Taeniopygia guttata
Taeniopygia guttata		 cDNA Array spotted DNA/cDNA, Songbird Neurogenomics Initiative 20K Array,
4 GPL928 Hofmann-cichlid-brain-array 4,688 Universit of Texas at Austin 2004-01-12 Haplochromis burtoni
Haplochromis burtoni		 cDNA Array spotted DNA/cDNA, Hofmann-cichlid-brain-array, This array is built from a Cichlid cDNA library first made in the lab of Russ Fernald. mRNA from brains of all ages and stages of the species Astatotilapia burtoni was used. colony picking, PCR amplification, and array printing have been done at Harvard's Bauer Center for Genomics Research in the lab of Hans Hofmann. the array also includes yeast control genes and a few other positive and negative controls Keywords = cichlid Keywords = brain
5 GPL8904 cGRASP Salmonid array, 32K cDNA, version 1, February 2009 33,696 Fisheries and Oceans Canada 2009-07-22 Consortium for Genomic Research on All Salmon Project Oncorhynchus mykiss,Salmo salar
Oncorhynchus mykiss,Salmo salar		 cDNA Array spotted DNA/cDNA, cGRASP Salmonid array, 32K cDNA, version 1, February 2009, 32k Salmonid cDNA microarray from cGRASP including features primarily from Atlantic salmon and rainbow trout.
6 GPL8731 NUIG_salmon_5K array_V2.0 (full array layout) 10,752 NUI Galway 2009-06-17 Liverpool Microarray Facility, School of Biological Sciences, University of Liverpool,Crown St,Liverpool L69 7ZB Oncorhynchus mykiss,Salmo salar
Oncorhynchus mykiss,Salmo salar		 cDNA Array spotted DNA/cDNA, NUIG_salmon_5K array_V2.0 (full array layout), Platform data table reflects full array layout in which all duplicate array features are represented. For funding reasons only those spots identified in subsequent microarray analysis as interesting were sequenced Every sequenced spot has a Genbank Accession Number associated with it.
7 GPL8704 NUIG_salmon_5K array_V1.0 (condensed array layout) 5,377 NUI Galway 2009-06-11 Liverpool Microarray Facility, School of Biological Sciences, University of Liverpool,Crown St,Liverpool L69 7ZB Oncorhynchus mykiss,Salmo salar
Oncorhynchus mykiss,Salmo salar		 cDNA Array spotted DNA/cDNA, NUIG_salmon_5K array_V1.0 (condensed array layout), Platform data table reflects condensed array layout in which duplicate array features are represented only once. ONLY CLONES OF INTEREST HAVE BEEN SEQUENCED AND IDENTIFIED Every sequenced spot has a Genbank Accession Number associated with it.
8 GPL8595 USDA 9.6K avian intestinal intraepithelial lymphocyte cDNA microarray (AVIELA) version 1 21,168 US Department of Agriculture 2009-05-26 Lab of Dr. Hyun Lillehoj, Animal Parasitic Diseases Laboratory, ARS, US Department of Agriculture (USDA) Gallus gallus
Gallus gallus		 cDNA Array spotted DNA/cDNA, USDA 9.6K avian intestinal intraepithelial lymphocyte cDNA microarray (AVIELA) version 1,
9 GPL8467 AQUAFIRST_seabream_18K_Ver1 38,976 NUI Galway 2009-04-22 Richard Reinhardt, MPI Molecular Genetics, Ihnestrasse 63-73, D-14195 Berlin-Dahlem, Germany Sparus aurata
Sparus aurata		 cDNA Array spotted DNA/cDNA, AQUAFIRST_seabream_18K_Ver1,
10 GPL8143 IOLR Lithognathus mormyrus 4608 v2.0 1,152 Israel Oceanographic and Limnological Research 2009-02-02 Moshe Tom's laboratory - Israel Oceanographic and Limnological Research, Haifa, Israel. Lithognathus mormyrus
Lithognathus mormyrus		 cDNA Array spotted DNA/cDNA, IOLR Lithognathus mormyrus 4608 v2.0, Two identical arrays were printed on one 2.5 x 7.5 cm glass (GAPS II slides, Corning) on an area less than 6 x 2 cm. The grid system of each arrray includes 4 x 6 sub-arrays, each containing 9 rows and 15 columns, a total of 1620 unique spots in duplicates, totaling 3240 spots. Not all the spots contained usable DNA.
11 GPL7360 RSMAS Crawford Fundulus 384 cDNA [full array version] 444 University of Miami 2008-09-23 Crawford Laboratory Fundulus heteroclitus
Fundulus heteroclitus		 cDNA Array spotted DNA/cDNA, RSMAS Crawford Fundulus 384 cDNA [full array version],
12 GPL7335 RSMAS Crawford Fundulus 384 cDNA [condensed array version] 212 University of Miami 2008-09-18 Crawford Laboratory- University of Miami Fundulus heteroclitus
Fundulus heteroclitus		 cDNA Array spotted DNA/cDNA, RSMAS Crawford Fundulus 384 cDNA [condensed array version],
13 GPL7056 AURATUS: The goldfish environmental genomics project 17K array v1.1 17,328 University of Ottawa 2008-07-16 University of Liverpool; Laboratory for Environmental Gene Regulation (LEGR) Carassius auratus,Cyprinus carpio
Carassius auratus,Cyprinus carpio		 cDNA Array spotted DNA/cDNA, AURATUS: The goldfish environmental genomics project 17K array v1.1,
14 GPL6997 UMSMED custom Ictalurus punctatus 9.2k microarray (v2008) 9,216 Naval Medical Research Center 2008-06-25 Microarrays Inc. Ictalurus punctatus
Ictalurus punctatus		 cDNA Array spotted DNA/cDNA, UMSMED custom Ictalurus punctatus 9.2k microarray (v2008),
15 GPL6976 Rana pirica tadpole-stage cDNA 3k array 3,072 Nihon University 2008-06-19 DNA Tip Institute Rana pirica
Rana pirica		 cDNA Array spotted DNA/cDNA, Rana pirica tadpole-stage cDNA 3k array, Tadpole Rana pirica cDNA microarray Keywords = Tadpole Rana pirica Keywords = cDNA array Keywords = gene expression
16 GPL6657 EBT Cyprinus carpio cDNA 1.6K array version 1 1,566 University of Antwerp 2008-03-27 University of Antwerp_EBT Cyprinus carpio
Cyprinus carpio		 cDNA Array spotted DNA/cDNA, EBT Cyprinus carpio cDNA 1.6K array version 1, Aminosilane coated GenoramaTM microarray slides (Asper Biotech, Tartu, Estonia)
17 GPL6416 Hofmann A. burtoni 16K brain_pinky_array_print4 16,970 Reed College 2008-01-24 Hofmann Haplochromis burtoni
Haplochromis burtoni		 cDNA Array spotted DNA/cDNA, Hofmann A. burtoni 16K brain_pinky_array_print4, synonym: Astatotilapia burtoni the array consists of 48 blocks (4#12) of 400 spots each (20X20) the physical array contains an adition set of yeast control features that are not included in the GEO platform NO EMPTY FEATURES NOR UNRELIABLE SPOTS (BAD PCR PRODUCT) ARE INCLUDED IN THIS PLATFORM
18 GPL6260 cGRASP Salmon 16k cDNA array 17,328 Université LAVAL 2007-12-10 cGRASP (consortium for Genomic Research on All Salmon Project) Salmo salar
Salmo salar		 cDNA Array spotted DNA/cDNA, cGRASP Salmon 16k cDNA array,
19 GPL6155 UKU_trout_1.3K_v2 8,736 Akvaforsk 2007-11-20 Centre of Biotechnology, Turku, Finland Oncorhynchus mykiss
Oncorhynchus mykiss		 cDNA Array spotted DNA/cDNA, UKU_trout_1.3K_v2,
20 GPL6154 UKU_trout_1.8K_v1 11,232 Akvaforsk 2007-11-20 Centre of Biotechnology, Turku, Finland Oncorhynchus mykiss
Oncorhynchus mykiss		 cDNA Array spotted DNA/cDNA, UKU_trout_1.8K_v1,
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