| 1 |
GPL15905 |
Viro5AG-60k (Probe Name version) |
60,512 |
University of California, San Francisco |
2012-08-08 |
Agilent Technologies |
Viruses
 |
cDNA Array |
spotted DNA/cDNA, Viro5AG-60k (Probe Name version), This platform includes more than 60,000 oligonucleotides for the detection and discovery of both known and novel viruses. The sequences of 36,432 viral probes from this platform have been previously published in the GEO database as MegaViro (GPL1834), Viro3 (GPL3429), and Viro4 (GPL6862), collectively now designated as V3/V4 viral probe sets. For comparison purposes, both 70mer and 60mer representations of these viral oligos are present. Some viral probes corresponding to phages and other less critical targets have been removed. More than 20,000 additional probes have been added for (1) better subtyping of respiratory and diarrheal viral as well as nonviral pathogens, (2) enhanced detection of specific viral families, and (3) subtyping of HIV/SIV strains. Control oligonucleotides are also included in the design. |
| 2 |
GPL11662 |
Viro5AGL-60k [Probe name version] |
59,532 |
University of California, San Francisco |
2011-01-27 |
Agilent Technologies |
Viruses
|
cDNA Array |
spotted DNA/cDNA, Viro5AGL-60k [Probe name version], This platform includes more than 60000 oligonucleotides for the detection and discovery of both known and novel viruses. The sequences of ~36,000 of the viral probes on this platform have been previously published in the GEO database as MegaViro (GPL1834), Viro3 (GPL3429), and Viro4 (GPL6862). For comparison purposes, both 70mer and 60mer representations of these viral oligos are present. Some viral probes corresponding to phages and other less critical targets have been removed. More than 20,000 additional probes have been added for (1) better subtyping of respiratory and diarrheal viral as well as nonviral pathogens, (2) enhanced detection of specific viral families, and (3) subtyping of HIV/SIV strains. Control oligonucleotides are also included in the design. |
| 3 |
GPL5159 |
NimbleGen pathogenic virus whole-genome tiling array_Patharray2 |
54,117 |
Genome Institute of Singapore |
2007-05-11 |
NimbleGen Systems Inc. |
Viruses
|
Tiling Array |
in situ oligonucleotide, NimbleGen pathogenic virus whole-genome tiling array_Patharray2, Pathogen detection chip Patharray2 is a tiling array covering the full genomes of 35 viruses (sequence downloaded from NCBI taxonomy webpage). Pathogen recognition signatures, comprising all probes which will hybridize to a given pathogen (including all similar probes from other pathogens which are predicted to cross-hybridize) were created. There are 7 replicates of each 40-mer probe, together with hybridization controls. The Platform data table reflects a condensed representation of the array. The complete array layout file (including the 7 replicates of each 40-mer probe) is linked as a supplementary file. |
| 4 |
GPL10319 |
Virus 45K Microarray - Agilent 25161471 |
45,220 |
Columbia University |
2010-04-12 |
Agilent |
Viruses
|
Oligo Array |
in situ oligonucleotide, Virus 45K Microarray - Agilent 25161471, |
| 5 |
GPL10320 |
Virus 45K Microarray - Agilent 2517771 |
45,220 |
Columbia University |
2010-04-12 |
Agilent |
Viruses
|
Oligo Array |
in situ oligonucleotide, Virus 45K Microarray - Agilent 2517771, |
| 6 |
GPL15022 |
Recombination Detection Microarray Release I (R1.1Tiled) |
43,414 |
Washington University in St. Louis, School of Medicine |
2011-12-16 |
Agilent |
Togaviridae,Flaviviridae,Bunyaviridae
 |
cDNA Array |
spotted DNA/cDNA, Recombination Detection Microarray Release I (R1.1Tiled), |
| 7 |
GPL10356 |
WashU-Virgin gHV68 44k v1.0 |
42,525 |
Washington University-School of Medicine |
2010-04-23 |
Agilent |
Murid herpesvirus 4
 |
Oligo Array |
in situ oligonucleotide, WashU-Virgin gHV68 44k v1.0, |
| 8 |
GPL10002 |
Rhesus cytomegalovirus 68-1 platform |
31,633 |
Vaccine and Gene Therapy Institute |
2010-02-02 |
NimbleGen |
Macacine herpesvirus 3
 |
Oligo Array |
in situ oligonucleotide, Rhesus cytomegalovirus 68-1 platform, |
| 9 |
GPL3429 |
Viro3 |
21,888 |
University of California, San Francisco |
2006-02-07 |
DeRisi Lab, University of CA, San Francisco |
Viruses
|
Oligo Array |
spotted oligonucleotide, Viro3, This platform includes ~22,000 oligonucleotides derived from ~1200 viral species and is an extension of the MegaViro platform (GPL1834), which contained ~11,000 oligonucleotides that were designed to represent regions of highest conservation among viral genomes (Wang D, Coscoy L, et al 2002). About 11,000 additional viral oligonucleotides were designed using all the viral sequences in GenBank as of April 2004. The new oligos were chosen using the ViroTax system (manuscript in preparation) such that all viral taxa represented in GenBank are distinguishable using the microarray to the extent possible given differential binding energies. This platform also includes 488 oligonucleotides from 35 bacterial species, 20 oligonucleotides from 2 human endogenous retroviruses, and 308 control oligonucleotides including 108 OPERON oligonucleotides of highly expressed human genes. |
| 10 |
GPL6701 |
Hannon Lab Solexa Flock house virus |
20,338 |
Cold Spring Harbor Labs |
2008-04-07 |
|
Flock house virus
 |
HT Sequencing |
other, Hannon Lab Solexa Flock house virus, |
| 11 |
GPL13323 |
Viro5 |
17,496 |
University of California San Francisco |
2011-03-23 |
DeRisi Lab, UCSF |
Viruses
|
Oligo Array |
spotted oligonucleotide, Viro5, This platform includes ~17,500 oligonucleotides derived from ~2000 viral species. These oligonucleotides include all of those from the Viro4 platform (GPL6862) as well as ~1700 additional oligonucleoties derived from virus sequences added to databases since the creation of Viro4. This platform includes control oligonucleotides for human endogenous retroviruses, human genes, yeast intergenic sequences, and human papilloma virus sequences present in HeLa cells. Keywords = viruses, virus detection, virus discovery |
| 12 |
GPL6862 |
Viro4 |
15,776 |
University of California, San Francisco |
2008-05-14 |
DeRisi Lab, UCSF |
Viruses
|
Oligo Array |
spotted oligonucleotide, Viro4, This platform includes ~15,000 oligonucleotides derived from ~1200 viral species. The best-performing viral oligonucleotides from the Viro3 platform (GPL3429) were carried over to the Viro4 platform. The platform also includes additional viral oligonucleotides generated using a computer algorithm to obtain desired coverage of viral taxonomic groups (ViroTax, Fischer K, manuscript in preparation). This platform also includes the following control oligonucleotides: human endogenous retroviruses, highly expressed human genes, and yeast intergenic sequences. |
| 13 |
GPL8448 |
USDA/APHIS/FADDL Pan-viral 15K v4.2 |
15,744 |
USDA-APHIS |
2009-04-15 |
Agilent |
Viruses
|
Oligo Array |
spotted oligonucleotide, USDA/APHIS/FADDL Pan-viral 15K v4.2, |
| 14 |
GPL10345 |
Hemorrhagic Fever Microarray Release I (V2.10HF) |
14,864 |
Washington University in St. Louis, School of Medicine |
2010-04-20 |
Agilent |
Flaviviridae,Filoviridae,Bunyaviridae,Arenaviridae
 |
cDNA Array |
spotted DNA/cDNA, Hemorrhagic Fever Microarray Release I (V2.10HF), |
| 15 |
GPL1834 |
MegaViroP1-P7 |
12,504 |
University of California, San Francisco |
2005-02-02 |
|
Viruses
|
Oligo Array |
spotted oligonucleotide, MegaViroP1-P7, Spotted 70-mer nucleotide array on glass. This platform includes ~11,000 oligonucleotides derived from ~1000 viral species. Most viral oligonucleotides were designed to represent regions of highest conservation among viral genomes. The platform also includes 488 oligonucleotides from 35 bacterial species, 20 oligonucleotides from 2 human endogenous retroviruses, and 308 control oligonucleotides including 108 OPERON oligonucleotides of highly expressed human genes. This platform is essentially the same as GPL366, except 316 new viral oligos from 32 viruses sharing little sequence homology with other viruses have been added; these oligos were selected from protein coding regions using ArrayOligoSelector software (Bozdech Z, Zhu J, et. al 2003). Keywords = viruses, virus detection, virus discovery |
| 16 |
GPL15245 |
Agilent-027295 Murine herpesvirus 68 array [Feature Number version] |
12,453 |
Stony Brook University |
2012-02-16 |
Agilent Technologies |
Murid herpesvirus 4
|
Oligo Array |
in situ oligonucleotide, Agilent-027295 Murine herpesvirus 68 array [Feature Number version], 4 X 44K array; a total of 11,940 60-mer oligonucleotides with 20-nucleotide spacing were generated based on the MHV68/Murid herpesvirus 4 genomic sequence (NCBI RefSeq NC_001826) to enable triple probe coverage of every nucleotide of both strands of the virus. |
| 17 |
GPL10896 |
Viro5AG-60k |
12,361 |
University of California, San Francisco |
2010-09-08 |
Agilent Technologies |
Viruses
|
cDNA Array |
spotted DNA/cDNA, Viro5AG-60k, This platform includes more than 60,000 oligonucleotides for the detection and discovery of both known and novel viruses. The sequences of ~36,000 of the viral |
| 18 |
GPL10897 |
Viro4AG-15k |
12,361 |
University of California, San Francisco |
2010-09-08 |
Agilent Technologies |
Viruses
|
cDNA Array |
spotted DNA/cDNA, Viro4AG-15k, This platform includes ~15,000 oligonucleotides derived from ~1,200 viral species. The sequences of the 70mer microarray probes on this platform are identical to the Viro4 probes as previously reported |
| 19 |
GPL10898 |
Viro5AGL-60k |
12,361 |
University of California, San Francisco |
2010-09-08 |
Agilent Technologies |
Viruses
|
cDNA Array |
spotted DNA/cDNA, Viro5AGL-60k, This platform includes more than 60,000 oligonucleotides for the detection and discovery of both known and novel viruses. The sequences of ~36,000 of the viral |
| 20 |
GPL15244 |
Agilent-025537 Murine herpesvirus 68 [Feature Number version] |
12,241 |
Stony Brook University |
2012-02-16 |
Agilent Technologies |
Murid herpesvirus 4
|
Oligo Array |
in situ oligonucleotide, Agilent-025537 Murine herpesvirus 68 [Feature Number version], 8 X 15K array; a total of 11,940 60-mer oligonucleotides with 20-nucleotide spacing were generated based on the MHV68/Murid herpesvirus 4 genomic sequence (NCBI RefSeq NC_001826) to enable triple probe coverage of every nucleotide of both strands of the virus. |
|