Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(77)
  Primates
(0)
  Rodents
(38)
  Mammals
(17)
  Vertebrates
(14)
  Invertebrates
(22)
  Plants
(51)
  Bacteria
(73)
  Viruses
(6)
  Phages
(1)
  Unclassified
(22)
  All
(324)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(1)
  Oligo Array
(5)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(6)
 
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16935 Agilent-035096 Pathogen_version2 62,976 BioChainBJ 2013-03-29 Agilent Technologies Viruses
Viruses
Oligo Array in situ oligonucleotide, Agilent-035096 Pathogen_version2, Pathogen_version2 Arrays of this design have barcodes that begin with 16035096 or 2535096. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
2 GPL17489 Agilent-042984 Pathogen Version 3 62,976 BioChainBJ 2013-07-25 Agilent Technologies Viruses
Viruses
Oligo Array in situ oligonucleotide, Agilent-042984 Pathogen Version 3, Pathogen microarray version 3 035096 Arrays of this design have barcodes that begin with 16042984 or 2542984. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
3 GPL4893 Singapore Grouper Iridovirus 0.5K genomic DNA microarray 576 Sun yet-san university 2007-02-27 National Engineering Research Center for Beijing Biochip Technology, 18 Life Science Parkway, Changping District, Beijing 102206, People’s Republic of China. Iridovirus
Iridovirus
cDNA Array spotted DNA/cDNA, Singapore Grouper Iridovirus 0.5K genomic DNA microarray,
4 GPL8484 Plant virus detection microarray 345 Chinese Academy of Inspection and Quarantine 2009-04-27 CapitalBio Corp. Tospovirus,Sobemovirus,Carlavirus,Capillovirus,Potexvirus,Potyvirus,Tobamovirus,Comovirus,Nepovirus,Tobravirus,Cucumovirus,Ilarvirus,Pomovirus
Tospovirus,Sobemovirus,Carlavirus,Capillovirus,Potexvirus,Potyvirus,Tobamovirus,Comovirus,Nepovirus,Tobravirus,Cucumovirus,Ilarvirus,Pomovirus
Oligo Array in situ oligonucleotide, Plant virus detection microarray, 70mer probes were designed to detect plant viruses infection in genus level. This microarray platform is able to detect 169 plant virus species of 13 virus genera.
5 GPL18147 Prawn miRNA Array 228 ZJU 2014-01-08 LC Sciences Shrimp white spot syndrome virus
Shrimp white spot syndrome virus
Oligo Array in situ oligonucleotide, Prawn miRNA Array, Part No.MRA-1001B1C
6 GPL16684 Plant Viroid Detection Microarray 103 Chinese Academy of Inspection and Quarantine 2013-02-14 CapitalBio, Corp. Hostuviroid,Pospiviroid,Cocadviroid,Apscaviroid,Coleviroid,Avsunviroid,Pelamoviroid,Elaviroid
Hostuviroid,Pospiviroid,Cocadviroid,Apscaviroid,Coleviroid,Avsunviroid,Pelamoviroid,Elaviroid
Oligo Array in situ oligonucleotide, Plant Viroid Detection Microarray, This microarray platform is designed to detect plant viroids infection at the genus level. It is able to detect a wide spectrum of all the 8 reported viroid genera, including 37 known plant viroid species.