Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(1)		   cDNA Array
(8)		   Oligo Array
(40)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(27)		   Other
(2)		   All
(78)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL6599 WUSTL Human Herpesvirus 1 389 Washington Univeristy School of Medicine 2008-03-18 Washington University School of Medicine Human herpesvirus 1
Human herpesvirus 1		 Oligo Array spotted oligonucleotide, WUSTL Human Herpesvirus 1, To construct a gene-specific microarray of the Human Herpesvirus 1 (Herpes simplex virus type 1) genome, we designed 70-mer oligonucleotide array elements. Predicted and known HHV-1 genes were obtained from the strain 17 sequence on the NCBI website (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NC_001806). In addition, genes derived from mouse, common marker and selection genes, and mutant virus sequences were included. Arabidopsis elements were included for normalization. Oligonucleotides were designed from these sequences using ArrayOligoSelector.
2 GPL15366 PHRI-UMNDJ Human cytomegalovirus 1.5K CAG_HCMV [gene-level] 285 Center for Applied Genomics 2012-03-21 The Center for Applied Genomics at the Public Health Research Insitute of UMDNJ Human herpesvirus 5
Human herpesvirus 5		 Oligo Array spotted oligonucleotide, PHRI-UMNDJ Human cytomegalovirus 1.5K CAG_HCMV [gene-level],
3 GPL7229 OHSU_macaque_RRV_252_v1 252 Oregon Health & Science University 2008-08-28 Oregon Health & Science University/Spotted Microarray Core Macaca mulatta rhadinovirus 17577
Macaca mulatta rhadinovirus 17577		 Oligo Array spotted oligonucleotide, OHSU_macaque_RRV_252_v1,
4 GPL5159 NimbleGen pathogenic virus whole-genome tiling array_Patharray2 54,117 Genome Institute of Singapore 2007-05-11 NimbleGen Systems Inc. Viruses
Viruses		 Tiling Array in situ oligonucleotide, NimbleGen pathogenic virus whole-genome tiling array_Patharray2, Pathogen detection chip Patharray2 is a tiling array covering the full genomes of 35 viruses (sequence downloaded from NCBI taxonomy webpage). Pathogen recognition signatures, comprising all probes which will hybridize to a given pathogen (including all similar probes from other pathogens which are predicted to cross-hybridize) were created. There are 7 replicates of each 40-mer probe, together with hybridization controls. The Platform data table reflects a condensed representation of the array. The complete array layout file (including the 7 replicates of each 40-mer probe) is linked as a supplementary file.
5 GPL10002 Rhesus cytomegalovirus 68-1 platform 31,633 Vaccine and Gene Therapy Institute 2010-02-02 NimbleGen Macacine herpesvirus 3
Macacine herpesvirus 3		 Oligo Array in situ oligonucleotide, Rhesus cytomegalovirus 68-1 platform,
6 GPL4893 Singapore Grouper Iridovirus 0.5K genomic DNA microarray 576 Sun yet-san university 2007-02-27 National Engineering Research Center for Beijing Biochip Technology, 18 Life Science Parkway, Changping District, Beijing 102206, People’s Republic of China. Iridovirus
Iridovirus		 cDNA Array spotted DNA/cDNA, Singapore Grouper Iridovirus 0.5K genomic DNA microarray,
7 GPL8338 Univ of Miss. Frog virus 3 (family Iridoviridae) array 124 Naval Medical Research Center 2009-03-24 Microarrays Inc. Frog virus 3
Frog virus 3		 Oligo Array spotted oligonucleotide, Univ of Miss. Frog virus 3 (family Iridoviridae) array,
8 GPL6852 UMDNJ/Lukac Human herpesvirus 8/107+GAPDH 107 UMDNJ/NJ Medical School 2008-05-09 Lukac laboratory and Center for Applied Genomics/UMDNJ/NJ Medical School Human herpesvirus 8
Human herpesvirus 8		 Oligo Array spotted oligonucleotide, UMDNJ/Lukac Human herpesvirus 8/107+GAPDH,
9 GPL9687 Plymouth Marine Laboratory CroV Microarray Version 1 4,320 Plymouth Marine Laboratory 2009-11-17 Liverpool Microarray Facility Cafeteria roenbergensis virus BV-PW1
Cafeteria roenbergensis virus BV-PW1		 Oligo Array spotted oligonucleotide, Plymouth Marine Laboratory CroV Microarray Version 1, Cafeteria roenbergensis virus CroV
10 GPL16497 Utz lab influenza peptide array 72 Stanford University 2013-01-11 Laboratory of Paul J. Utz Influenza B virus,H1N1 subtype,H3N2 subtype
Influenza B virus,H1N1 subtype,H3N2 subtype		 Other spotted peptide or protein, Utz lab influenza peptide array, Influenza - Orthomyxovidiae, H1N1 (A/Brisbane/59/2007), H3N2 (A/Brisbane/10/2007), and B (B/Brisbane/60/2008)
11 GPL11421 JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain 229E 743 J. Craig Venter Institute 2011-01-11 JCVI PFGRC Human coronavirus 229E
Human coronavirus 229E		 Oligo Array spotted oligonucleotide, JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain 229E, This set includes 263 oligonucleotides, has 3456 spots distributed in 96 blocks.
12 GPL11422 JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain Beaudette 743 J. Craig Venter Institute 2011-01-11 JCVI PFGRC Betacoronavirus
Betacoronavirus		 Oligo Array spotted oligonucleotide, JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain Beaudette, This set includes 263 oligonucleotides, has 3456 spots distributed in 96 blocks.
13 GPL11423 JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain BCoV-ENT 743 J. Craig Venter Institute 2011-01-11 JCVI PFGRC Betacoronavirus
Betacoronavirus		 Oligo Array spotted oligonucleotide, JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain BCoV-ENT, This set includes 263 oligonucleotides, has 3456 spots distributed in 96 blocks.
14 GPL11424 JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain Purdue 743 J. Craig Venter Institute 2011-01-11 JCVI PFGRC Betacoronavirus
Betacoronavirus		 Oligo Array spotted oligonucleotide, JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain Purdue, This set includes 263 oligonucleotides, has 3456 spots distributed in 96 blocks.
15 GPL11425 JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain MHV-A59 743 J. Craig Venter Institute 2011-01-11 JCVI PFGRC Alphacoronavirus
Alphacoronavirus		 Oligo Array spotted oligonucleotide, JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain MHV-A59, This set includes 263 oligonucleotides, has 3456 spots distributed in 96 blocks.
16 GPL11426 JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain ATCC_VR-759 743 J. Craig Venter Institute 2011-01-11 JCVI PFGRC Gammacoronavirus
Gammacoronavirus		 Oligo Array spotted oligonucleotide, JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain ATCC_VR-759, This set includes 263 oligonucleotides, has 3456 spots distributed in 96 blocks.
17 GPL11427 JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain CV777 743 J. Craig Venter Institute 2011-01-11 JCVI PFGRC Betacoronavirus
Betacoronavirus		 Oligo Array spotted oligonucleotide, JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain CV777, This set includes 263 oligonucleotides, has 3456 spots distributed in 96 blocks.
18 GPL11428 JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain Tor2 743 J. Craig Venter Institute 2011-01-11 JCVI PFGRC Gammacoronavirus
Gammacoronavirus		 Oligo Array spotted oligonucleotide, JCVI PFGRC Corona virus 3K v1 array designed primarily based on strain Tor2, This set includes 263 oligonucleotides, has 3456 spots distributed in 96 blocks.
19 GPL8185 IAH/VLA/CEFAS Virus Detection Array 6K VA3 6,048 The Roslin Institute 2009-02-12 IAH/VLA Viruses
Viruses		 Oligo Array spotted oligonucleotide, IAH/VLA/CEFAS Virus Detection Array 6K VA3, Microarray for the detection of viruses, produced by the IAH, the VLA and CEFAS.
20 GPL5725 IAH/VLA Virus Detection Array VA1 5,824 The Roslin Institute 2007-08-08 IAH/VLA Viruses
Viruses		 Oligo Array spotted oligonucleotide, IAH/VLA Virus Detection Array VA1,
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