Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(1)		   cDNA Array
(1)		   Oligo Array
(28)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(21)		   Other
(0)		   All
(51)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 siRNAs 15-29 nucleotides long with 100 percent hit to Cocksfoot streak virus (GSE12052) [HT Sequencing] 454 GS (Cocksfoot streak virus) (GPL9382) CEH Oxford 2008-07-09 Cocksfoot streak virus
Cocksfoot streak virus		 1
(0 x 1) 		1 by_platform
by_series
2 siRNAs 15-29 nucleotides long with 100 percent hit to Turnip mosaic virus clone GBR98 (GSE12053) [HT Sequencing] 454 GS (Turnip mosaic virus) (GPL9383) CEH Oxford 2008-07-09 Turnip mosaic virus
Turnip mosaic virus		 1
(0 x 1) 		1 by_platform
by_series
3 High-throughput pyrosequencing of plant virus small RNAs (GSE16996) [HT Sequencing] 454 GS FLX (Cucumber mosaic virus) (GPL9370) Technische Universität München 2009-07-08 Cucumber mosaic virus
Cucumber mosaic virus		 1
(0 x 1) 		1 by_platform
by_series
4 High-throughput pyrosequencing of plant virus small RNAs (GSE16996) [HT Sequencing] 454 GS FLX (Cymbidium ringspot virus) (GPL9371) Technische Universität München 2009-07-08 Cymbidium ringspot virus
Cymbidium ringspot virus		 1
(0 x 1) 		1 by_platform
by_series
5 Therapeutic silencing of microRNA-122 in primates with chronic hepatitis C virus infection (GSE18919) [HT Sequencing] 454 GS FLX (Hepatitis C virus) (GPL9540) Santaris Pharma 2009-11-06 Hepatitis C virus
Hepatitis C virus		 16
(0 x 16) 		16 by_platform
by_series
6 High-throughput pyrosequencing of plant virus small RNAs (GSE16996) [HT Sequencing] 454 GS FLX (Melon necrotic spot virus) (GPL9374) Technische Universität München 2009-07-08 Melon necrotic spot virus
Melon necrotic spot virus		 2
(0 x 2) 		2 by_platform
by_series
7 High-throughput pyrosequencing of plant virus small RNAs (GSE16996) [HT Sequencing] 454 GS FLX (Pepper mild mottle virus) (GPL9373) Technische Universität München 2009-07-08 Pepper mild mottle virus
Pepper mild mottle virus		 1
(0 x 1) 		1 by_platform
by_series
8 High-throughput pyrosequencing of plant virus small RNAs (GSE16996) [HT Sequencing] 454 GS FLX (Potato virus X) (GPL9372) Technische Universität München 2009-07-08 Potato virus X
Potato virus X		 1
(0 x 1) 		1 by_platform
by_series
9 High-throughput pyrosequencing of plant virus small RNAs (GSE16996) [HT Sequencing] 454 GS FLX (Tobacco rattle virus) (GPL9368) Technische Universität München 2009-07-08 Tobacco rattle virus
Tobacco rattle virus		 1
(0 x 1) 		1 by_platform
by_series
10 High-throughput pyrosequencing of plant virus small RNAs (GSE16996) [HT Sequencing] 454 GS FLX (Tomato yellow leaf curl virus) (GPL9376) Technische Universität München 2009-07-08 Tomato yellow leaf curl virus
Tomato yellow leaf curl virus		 1
(0 x 1) 		1 by_platform
by_series
11 High-throughput pyrosequencing of plant virus small RNAs (GSE16996) [HT Sequencing] 454 GS FLX (Turnip mosaic virus) (GPL9369) Technische Universität München 2009-07-08 Turnip mosaic virus
Turnip mosaic virus		 1
(0 x 1) 		1 by_platform
by_series
12 High-throughput pyrosequencing of plant virus small RNAs (GSE16996) [HT Sequencing] 454 GS FLX (Watermelon mosaic virus) (GPL9375) Technische Universität München 2009-07-08 Watermelon mosaic virus
Watermelon mosaic virus		 1
(0 x 1) 		1 by_platform
by_series
13 VLA lyssavirus genotyping dataset (GSE14705) [Oligo Array] AH/VLA Virus Detection Array LP1 1.6K (GPL8066) Veterinary Laboratories Agency 2009-02-04 Rabies virus
Rabies virus		 22,400
(1,600 x 14) 		13 1 by_platform
by_series
14 The Detection and Subtyping of Seasonal Influenza A H1N1 Isolates Using a Microarray (GSE12226) [Oligo Array] CombiMatrix_Influenza A_12,000_design 5200 (GPL7090) CombiMatrix Corp 2008-07-24 Influenza A virus
Influenza A virus		 312,520
(12,020 x 26) 		24 2 by_platform
by_series
15 VIPR: A probabilistic algorithm for analysis of microbial detection microarrays (GSE21407) [cDNA Array] Hemorrhagic Fever Microarray Release I (V2.10HF) (GPL10345) Washington University in St. Louis, School of Medicine 2010-04-20 Dengue virus 1
Dengue virus 1		 1,635,040
(14,864 x 110) 		2 108 by_platform
by_series
16 Serial time induction by TPA on BCBL-1 cells in the absence or presence of viral replication inhibitor cidofovir (GSE1640) [Oligo Array] HHV8/KSHVvo1 (GPL1386) National Cancer Institute 2004-08-04 Human herpesvirus 8
Human herpesvirus 8		 92,160
(1,536 x 60) 		60 by_platform
by_series
17 IAH/VLA VA1 Virus Detection Array Dataset (GSE8746) [Oligo Array] IAH/VLA Virus Detection Array VA1 (GPL5725) The Roslin Institute 2007-08-10 Infectious bronchitis virus
Infectious bronchitis virus		 69,888
(5,824 x 12) 		4 8 by_platform
by_series
18 EBNA1 ChIP-seq and MNase-seq in EBV-positive MUTU cell lines (GSE39913) [HT Sequencing] Illumina Genome Analyzer (Human herpesvirus 4) (GPL15906) Memorial Sloan-Kettering Cancer Center 2012-08-06 Human herpesvirus 4
Human herpesvirus 4		 6
(0 x 6) 		2 4 by_platform
by_series
19 Characterization of small interfering RNAs derived from the geminivirus/betasatellite complex using deep sequencing (GSE26368) [HT Sequencing] Illumina Genome Analyzer (Tomato yellow leaf curl China virus) (GPL11369) Zhejiang University 2010-12-30 Tomato yellow leaf curl China virus
Tomato yellow leaf curl China virus		 5
(0 x 5) 		5 by_platform
by_series
20 Population of viral small RNAs expressed in common marmoset (Callithrix jacchus) T cells latently infected with Herpesvirus saimiri (strain A11) (GSE31065) [HT Sequencing] Illumina Genome Analyzer II (Herpesvirus saimiri (strain 11)) (GPL14002) Yale University 2011-07-30 Herpesvirus saimiri (strain 11)
Herpesvirus saimiri (strain 11)		 1
(0 x 1) 		1 by_platform
by_series
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