Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(40)		   cDNA Array
(102)		   Oligo Array
(1,057)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(67)		   Other
(0)		   All
(1,266)		  
  brain
(12)		   blood
(274)		   connective
(420)		   reproductive
(0)		   muscular
(0)		   digestive
(1)		   liver
(0)		   lung
(28)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(1)		   unclassified
(530)		   all
(1,266)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM982661 MutuI Input Control (Matched to MNase-seq) Rep2 0 Memorial Sloan-Kettering Cancer Center 2012-08-08 [HT Sequencing] Illumina Genome Analyzer (Human herpesvirus 4) (GPL15906) SRA Human herpesvirus 4
Human herpesvirus 4		 unclassified source_name:MutuI title:MutuI Input Control (Matched to MNase-seq) Rep2 description:MutuI IgG Control (Matched to MNase-seq)
2 GSM982660 MutuI Input Control (Matched to MNase-seq) Rep1 0 Memorial Sloan-Kettering Cancer Center 2012-08-08 [HT Sequencing] Illumina Genome Analyzer (Human herpesvirus 4) (GPL15906) SRA Human herpesvirus 4
Human herpesvirus 4		 unclassified source_name:MutuI title:MutuI Input Control (Matched to MNase-seq) Rep1 description:MutuI IgG Control (Matched to MNase-seq)
3 GSM982659 MutuI MNase-seq Rep2 0 Memorial Sloan-Kettering Cancer Center 2012-08-08 [HT Sequencing] Illumina Genome Analyzer (Human herpesvirus 4) (GPL15906) SRA Human herpesvirus 4
Human herpesvirus 4		 unclassified source_name:MutuI title:MutuI MNase-seq Rep2 description:MutuI MNase-seq
4 GSM982658 MutuI MNase-seq Rep1 0 Memorial Sloan-Kettering Cancer Center 2012-08-08 [HT Sequencing] Illumina Genome Analyzer (Human herpesvirus 4) (GPL15906) SRA Human herpesvirus 4
Human herpesvirus 4		 unclassified source_name:MutuI title:MutuI MNase-seq Rep1 description:MutuI MNase-seq
5 GSM982657 Raji IgG Control (Matched to EBNA1 ChIP) 0 Memorial Sloan-Kettering Cancer Center 2012-08-08 [HT Sequencing] Illumina Genome Analyzer (Human herpesvirus 4) (GPL15906) SRA Human herpesvirus 4
Human herpesvirus 4		 lymphnode Raji
6 GSM982656 Raji EBNA1 ChIP 0 Memorial Sloan-Kettering Cancer Center 2012-08-08 [HT Sequencing] Illumina Genome Analyzer (Human herpesvirus 4) (GPL15906) SRA Human herpesvirus 4
Human herpesvirus 4		 lymphnode Raji
7 GSM95960 Viro3P10-064 21,888 University of California, San Francisco 2006-02-07 [Oligo Array] Viro3 (GPL3429) RNA Viruses
Viruses		 unclassified source_name:amplified RNA from an ET aspirate sample from a patient with fulminant pneumonia title:Viro3P10-064 description:amplified RNA from an ET aspirate sample from a patient with fulminant pneumonia
8 GSM941712 KSHV LANA_ChIPSeq 0 The Wistar Institute 2012-06-01 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 8) (GPL15642) SRA Human herpesvirus 8
Human herpesvirus 8		 lymphnode BCBL1 pleural effusion lymphoma, KSHV LANA ChIP
9 GSM8530 Control culture 12,032 University of California, San Francisco 2003-07-21 [Oligo Array] MegaViroP1 (GPL366) RNA Viruses
Viruses		 unclassified source_name:viral culture supernatant total nucleic acid title:Control culture description:Uninfected Vero cell culture control Keywords = SARS Keywords = coronavirus Keywords = viral discovery Keywords = viruses Keywords = respiratory infection
10 GSM8529 Water negative control 12,032 University of California, San Francisco 2003-07-21 [Oligo Array] MegaViroP1 (GPL366) RNA Viruses
Viruses		 unclassified source_name:water negative control title:Water negative control description:No template, water only, control Keywords = SARS Keywords = coronavirus Keywords = viral discovery Keywords = viruses Keywords = respiratory infection
11 GSM8528 Infected culture 12,032 University of California, San Francisco 2003-07-21 [Oligo Array] MegaViroP1 (GPL366) RNA Viruses
Viruses		 unclassified source_name:viral culture supernatant total nucleic acid title:Infected culture description:Infected Vero cell culture supernatant Keywords = SARS Keywords = coronavirus Keywords = viral discovery Keywords = viruses Keywords = respiratory infection
12 GSM843862 Ago 2 immunoprecipitated RNA extracted from HHV-6 infected Sup-T-1 cells 0 CNRS - IBMC 2011-12-06 [HT Sequencing] Illumina Genome Analyzer IIx (Human herpesvirus 6B) (GPL14966) SRA Human herpesvirus 6B
Human herpesvirus 6B		 unclassified source_name:Ago 2 immunoprecipitated RNA extracted from HHV-6 infected Sup-T-1 cells title:Ago 2 immunoprecipitated RNA extracted from HHV-6 infected Sup-T-1 cells
13 GSM843861 Total RNA extracted from HHV-6 infected Sup-T-1 cells 0 CNRS - IBMC 2011-12-06 [HT Sequencing] Illumina Genome Analyzer IIx (Human herpesvirus 6B) (GPL14966) SRA Human herpesvirus 6B
Human herpesvirus 6B		 unclassified source_name:Total RNA extracted from HHV-6 infected Sup-T-1 cells title:Total RNA extracted from HHV-6 infected Sup-T-1 cells
14 GSM83134 MegaViroP7-246 12,499 University of California, San Francisco 2005-11-14 [Oligo Array] MegaViroP1-P7 (GPL1834) RNA Viruses
Viruses		 unclassified source_name:Amplified VP107 poly-A RNA title:MegaViroP7-246 description:VP107
15 GSM83133 MegaViroP5-199 12,475 University of California, San Francisco 2005-11-14 [Oligo Array] MegaViroP1-P7 (GPL1834) RNA Viruses
Viruses		 unclassified source_name:Amplified VP51 poly-A RNA title:MegaViroP5-199 description:VP51
16 GSM83132 MegaViroP7-245 12,499 University of California, San Francisco 2005-11-14 [Oligo Array] MegaViroP1-P7 (GPL1834) RNA Viruses
Viruses		 unclassified source_name:Amplified VP27 poly-A RNA title:MegaViroP7-245 description:VP27
17 GSM83131 MegaViroP8-037 12,493 University of California, San Francisco 2005-11-14 [Oligo Array] MegaViroP1-P7 (GPL1834) RNA Viruses
Viruses		 unclassified source_name:Amplified VP62 poly-A RNA title:MegaViroP8-037 description:VP62
18 GSM83130 MegaViroP7-244 12,499 University of California, San Francisco 2005-11-14 [Oligo Array] MegaViroP1-P7 (GPL1834) RNA Viruses
Viruses		 unclassified source_name:Amplified VP10 poly-A RNA title:MegaViroP7-244 description:VP10
19 GSM83129 MegaViroP5-197 12,475 University of California, San Francisco 2005-11-14 [Oligo Array] MegaViroP1-P7 (GPL1834) RNA Viruses
Viruses		 unclassified source_name:Amplified VP49 poly-A RNA title:MegaViroP5-197 description:VP49
20 GSM83128 MegaViroP5-196 12,475 University of California, San Francisco 2005-11-14 [Oligo Array] MegaViroP1-P7 (GPL1834) RNA Viruses
Viruses		 unclassified source_name:Amplified VP46 poly-A RNA title:MegaViroP5-196 description:VP46
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